Strain Fitness in Escherichia coli BL21 around ECD_01436

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01434 and ECD_01435 are separated by 194 nucleotidesECD_01435 and ECD_01436 are separated by 145 nucleotidesECD_01436 and ECD_01437 are separated by 133 nucleotides ECD_01434: ECD_01434 - formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible, at 1,507,018 to 1,507,671 _01434 ECD_01435: ECD_01435 - putative DNA-binding transcriptional regulator, at 1,507,866 to 1,508,150 _01435 ECD_01436: ECD_01436 - ethanol-active dehydrogenase/acetaldehyde-active reductase, at 1,508,296 to 1,509,306 _01436 ECD_01437: ECD_01437 - malate dehydrogenase, decarboxylating, NAD-requiring; malic enzyme, at 1,509,440 to 1,511,137 _01437 Position (kb) 1508 1509 1510Strain fitness (log2 ratio) -1 0 1 2at 1507.342 kb on + strand, within ECD_01434at 1507.528 kb on + strand, within ECD_01434at 1507.529 kb on - strand, within ECD_01434at 1507.989 kb on - strand, within ECD_01435at 1508.091 kb on - strand, within ECD_01435at 1508.593 kb on - strand, within ECD_01436at 1508.769 kb on - strand, within ECD_01436at 1509.260 kb on + strandat 1510.139 kb on - strand, within ECD_01437

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
remove
1,507,342 + ECD_01434 0.50 +0.3
1,507,528 + ECD_01434 0.78 -0.1
1,507,529 - ECD_01434 0.78 +1.1
1,507,989 - ECD_01435 0.43 +2.2
1,508,091 - ECD_01435 0.79 +1.8
1,508,593 - ECD_01436 0.29 -1.3
1,508,769 - ECD_01436 0.47 +0.6
1,509,260 + -0.7
1,510,139 - ECD_01437 0.41 -1.3

Or see this region's nucleotide sequence