Strain Fitness in Escherichia coli BL21 around ECD_01400

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01398 and ECD_01399 are separated by 0 nucleotidesECD_01399 and ECD_01400 overlap by 11 nucleotidesECD_01400 and ECD_01401 are separated by 21 nucleotides ECD_01398: ECD_01398 - putative ABC transporter ATPase, at 1,466,880 to 1,467,893 _01398 ECD_01399: ECD_01399 - putative ABC transporter permease, at 1,467,894 to 1,468,835 _01399 ECD_01400: ECD_01400 - putative ABC transporter permease, at 1,468,825 to 1,469,619 _01400 ECD_01401: ECD_01401 - gamma-aminobutyraldehyde dehydrogenase, at 1,469,641 to 1,471,065 _01401 Position (kb) 1468 1469 1470Strain fitness (log2 ratio) -1 0 1at 1468.403 kb on + strand, within ECD_01399at 1468.404 kb on - strand, within ECD_01399at 1468.408 kb on + strand, within ECD_01399at 1468.472 kb on + strand, within ECD_01399at 1468.792 kb on - strandat 1469.258 kb on + strand, within ECD_01400at 1469.366 kb on + strand, within ECD_01400at 1469.366 kb on + strand, within ECD_01400at 1469.530 kb on - strand, within ECD_01400at 1469.550 kb on + strandat 1469.550 kb on + strandat 1469.550 kb on + strandat 1469.640 kb on + strandat 1469.901 kb on + strand, within ECD_01401at 1469.901 kb on + strand, within ECD_01401at 1470.360 kb on + strand, within ECD_01401at 1470.517 kb on + strand, within ECD_01401

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
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1,468,403 + ECD_01399 0.54 +0.3
1,468,404 - ECD_01399 0.54 -1.4
1,468,408 + ECD_01399 0.55 -0.9
1,468,472 + ECD_01399 0.61 -1.5
1,468,792 - -1.7
1,469,258 + ECD_01400 0.54 -0.3
1,469,366 + ECD_01400 0.68 +0.2
1,469,366 + ECD_01400 0.68 +0.7
1,469,530 - ECD_01400 0.89 +0.3
1,469,550 + -0.5
1,469,550 + +0.9
1,469,550 + +0.5
1,469,640 + -0.3
1,469,901 + ECD_01401 0.18 +0.9
1,469,901 + ECD_01401 0.18 -1.7
1,470,360 + ECD_01401 0.50 -1.7
1,470,517 + ECD_01401 0.61 -0.2

Or see this region's nucleotide sequence