Strain Fitness in Escherichia coli BL21 around ECD_01390

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01388 and ECD_01390 are separated by 591 nucleotidesECD_01390 and ECD_01391 are separated by 39 nucleotides ECD_01388: ECD_01388 - lipoprotein, at 1,456,520 to 1,457,188 _01388 ECD_01390: ECD_01390 - IS609 transposase B, at 1,457,780 to 1,458,928 _01390 ECD_01391: ECD_01391 - BenE family inner membrane putative transporter, at 1,458,968 to 1,460,143 _01391 Position (kb) 1457 1458 1459Strain fitness (log2 ratio) -1 0 1 2 3at 1456.905 kb on + strand, within ECD_01388at 1456.981 kb on + strand, within ECD_01388at 1457.208 kb on - strandat 1457.358 kb on - strandat 1457.385 kb on - strandat 1457.487 kb on - strandat 1457.558 kb on - strandat 1458.465 kb on - strand, within ECD_01390at 1458.511 kb on - strand, within ECD_01390at 1458.656 kb on + strand, within ECD_01390at 1458.706 kb on + strand, within ECD_01390at 1458.793 kb on + strand, within ECD_01390at 1458.793 kb on + strand, within ECD_01390at 1459.542 kb on + strand, within ECD_01391at 1459.543 kb on - strand, within ECD_01391at 1459.685 kb on - strand, within ECD_01391at 1459.685 kb on - strand, within ECD_01391at 1459.700 kb on - strand, within ECD_01391

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
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1,456,905 + ECD_01388 0.58 -0.8
1,456,981 + ECD_01388 0.69 -0.9
1,457,208 - -1.6
1,457,358 - -1.3
1,457,385 - +0.0
1,457,487 - -0.2
1,457,558 - -0.7
1,458,465 - ECD_01390 0.60 -0.7
1,458,511 - ECD_01390 0.64 -1.6
1,458,656 + ECD_01390 0.76 +1.6
1,458,706 + ECD_01390 0.81 -0.7
1,458,793 + ECD_01390 0.88 -1.0
1,458,793 + ECD_01390 0.88 +2.6
1,459,542 + ECD_01391 0.49 -1.3
1,459,543 - ECD_01391 0.49 -1.3
1,459,685 - ECD_01391 0.61 -1.6
1,459,685 - ECD_01391 0.61 +3.1
1,459,700 - ECD_01391 0.62 -1.0

Or see this region's nucleotide sequence