Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01275 and ECD_01276 are separated by 26 nucleotides ECD_01276 and ECD_01277 are separated by 274 nucleotides ECD_01277 and ECD_01278 are separated by 1 nucleotides
ECD_01275: ECD_01275 - gamma-glutamyl-gamma-aminobutyrate hydrolase, at 1,347,486 to 1,348,250
_01275
ECD_01276: ECD_01276 - repressor for the divergent puu operons, putrescine inducible, at 1,348,277 to 1,348,834
_01276
ECD_01277: ECD_01277 - gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; succinate semialdehyde dehydrogenase, at 1,349,109 to 1,350,596
_01277
ECD_01278: ECD_01278 - gamma-glutamylputrescine oxidoreductase, at 1,350,598 to 1,351,878
_01278
Position (kb)
1349
1350
1351 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1348.141 kb on + strand, within ECD_01275 at 1348.189 kb on + strand at 1348.205 kb on + strand at 1348.451 kb on + strand, within ECD_01276 at 1348.451 kb on + strand, within ECD_01276 at 1348.451 kb on + strand, within ECD_01276 at 1348.530 kb on + strand, within ECD_01276 at 1348.668 kb on + strand, within ECD_01276 at 1348.750 kb on + strand, within ECD_01276 at 1348.750 kb on + strand, within ECD_01276 at 1348.750 kb on + strand, within ECD_01276 at 1348.816 kb on + strand at 1349.007 kb on + strand at 1349.036 kb on + strand at 1349.079 kb on - strand at 1350.073 kb on + strand, within ECD_01277 at 1350.170 kb on + strand, within ECD_01277 at 1350.287 kb on - strand, within ECD_01277 at 1350.505 kb on - strand at 1350.619 kb on + strand at 1350.622 kb on + strand at 1350.826 kb on + strand, within ECD_01278 at 1351.102 kb on + strand, within ECD_01278 at 1351.201 kb on + strand, within ECD_01278 at 1351.202 kb on - strand, within ECD_01278 at 1351.508 kb on - strand, within ECD_01278 at 1351.508 kb on - strand, within ECD_01278
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10 remove 1,348,141 + ECD_01275 0.86 +0.9 1,348,189 + +0.2 1,348,205 + -1.2 1,348,451 + ECD_01276 0.31 +2.0 1,348,451 + ECD_01276 0.31 +2.4 1,348,451 + ECD_01276 0.31 +2.5 1,348,530 + ECD_01276 0.45 +2.7 1,348,668 + ECD_01276 0.70 +1.1 1,348,750 + ECD_01276 0.85 +1.8 1,348,750 + ECD_01276 0.85 +2.4 1,348,750 + ECD_01276 0.85 +3.2 1,348,816 + -0.6 1,349,007 + -0.7 1,349,036 + +0.7 1,349,079 - +1.1 1,350,073 + ECD_01277 0.65 +2.0 1,350,170 + ECD_01277 0.71 +1.4 1,350,287 - ECD_01277 0.79 +0.8 1,350,505 - -0.2 1,350,619 + +0.3 1,350,622 + -1.1 1,350,826 + ECD_01278 0.18 -0.1 1,351,102 + ECD_01278 0.39 -0.3 1,351,201 + ECD_01278 0.47 -1.6 1,351,202 - ECD_01278 0.47 -1.2 1,351,508 - ECD_01278 0.71 -0.7 1,351,508 - ECD_01278 0.71 -1.7
Or see this region's nucleotide sequence