Strain Fitness in Escherichia coli BL21 around ECD_01081

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01080 and ECD_01081 are separated by 134 nucleotidesECD_01081 and ECD_01082 are separated by 117 nucleotides ECD_01080: ECD_01080 - endoribonuclease; RNA-binding protein, at 1,143,749 to 1,146,934 _01080 ECD_01081: ECD_01081 - uncharacterized protein, at 1,147,069 to 1,147,389 _01081 ECD_01082: ECD_01082 - 23S rRNA pseudouridine(955,2504,2580) synthase, at 1,147,507 to 1,148,466 _01082 Position (kb) 1147 1148Strain fitness (log2 ratio) -1 0 1 2at 1147.133 kb on - strand, within ECD_01081at 1147.205 kb on - strand, within ECD_01081at 1147.327 kb on - strand, within ECD_01081at 1147.327 kb on - strand, within ECD_01081at 1147.431 kb on - strandat 1147.452 kb on + strandat 1147.569 kb on + strandat 1147.665 kb on + strand, within ECD_01082at 1147.668 kb on + strand, within ECD_01082at 1147.707 kb on + strand, within ECD_01082at 1147.793 kb on + strand, within ECD_01082at 1147.793 kb on + strand, within ECD_01082at 1147.793 kb on + strand, within ECD_01082at 1147.795 kb on + strand, within ECD_01082at 1147.844 kb on + strand, within ECD_01082at 1147.862 kb on + strand, within ECD_01082at 1148.121 kb on + strand, within ECD_01082at 1148.166 kb on + strand, within ECD_01082at 1148.208 kb on + strand, within ECD_01082at 1148.247 kb on + strand, within ECD_01082at 1148.247 kb on + strand, within ECD_01082

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
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1,147,133 - ECD_01081 0.20 +1.7
1,147,205 - ECD_01081 0.42 +2.3
1,147,327 - ECD_01081 0.80 +1.8
1,147,327 - ECD_01081 0.80 +1.5
1,147,431 - -1.2
1,147,452 + +0.0
1,147,569 + +1.6
1,147,665 + ECD_01082 0.16 +1.5
1,147,668 + ECD_01082 0.17 +1.7
1,147,707 + ECD_01082 0.21 +1.7
1,147,793 + ECD_01082 0.30 +2.4
1,147,793 + ECD_01082 0.30 +1.6
1,147,793 + ECD_01082 0.30 +2.2
1,147,795 + ECD_01082 0.30 +2.0
1,147,844 + ECD_01082 0.35 +0.3
1,147,862 + ECD_01082 0.37 +0.6
1,148,121 + ECD_01082 0.64 +2.2
1,148,166 + ECD_01082 0.69 +2.0
1,148,208 + ECD_01082 0.73 -0.7
1,148,247 + ECD_01082 0.77 +1.3
1,148,247 + ECD_01082 0.77 -1.3

Or see this region's nucleotide sequence