Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01068 and ECD_01069 are separated by 154 nucleotides ECD_01069 and ECD_01070 are separated by 3 nucleotides ECD_01070 and ECD_01071 are separated by 11 nucleotides ECD_01071 and ECD_01072 are separated by 24 nucleotides
ECD_01068: ECD_01068 - assembly protein for flagellar basal-body periplasmic P ring, at 1,132,774 to 1,133,433
_01068
ECD_01069: ECD_01069 - flagellar component of cell-proximal portion of basal-body rod, at 1,133,588 to 1,134,004
_01069
ECD_01070: ECD_01070 - flagellar component of cell-proximal portion of basal-body rod, at 1,134,008 to 1,134,412
_01070
ECD_01071: ECD_01071 - flagellar hook assembly protein, at 1,134,424 to 1,135,119
_01071
ECD_01072: ECD_01072 - flagellar hook protein, at 1,135,144 to 1,136,349
_01072
Position (kb) 1134
1135
1136 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1133.454 kb on - strand at 1133.467 kb on + strand at 1133.500 kb on - strand at 1133.572 kb on + strand at 1133.587 kb on + strand at 1133.745 kb on + strand, within ECD_01069 at 1133.745 kb on + strand, within ECD_01069 at 1133.846 kb on + strand, within ECD_01069 at 1133.878 kb on + strand, within ECD_01069 at 1133.933 kb on + strand, within ECD_01069 at 1134.150 kb on + strand, within ECD_01070 at 1134.410 kb on + strand at 1134.423 kb on + strand at 1134.483 kb on + strand at 1134.876 kb on + strand, within ECD_01071 at 1134.965 kb on + strand, within ECD_01071 at 1134.965 kb on + strand, within ECD_01071 at 1135.078 kb on + strand at 1135.078 kb on + strand at 1135.112 kb on + strand at 1135.239 kb on + strand at 1135.473 kb on + strand, within ECD_01072 at 1135.484 kb on + strand, within ECD_01072 at 1135.587 kb on + strand, within ECD_01072 at 1135.675 kb on + strand, within ECD_01072 at 1135.774 kb on + strand, within ECD_01072 at 1135.774 kb on + strand, within ECD_01072 at 1135.803 kb on + strand, within ECD_01072 at 1135.875 kb on + strand, within ECD_01072 at 1135.890 kb on + strand, within ECD_01072 at 1135.962 kb on + strand, within ECD_01072 at 1136.011 kb on + strand, within ECD_01072
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10 remove 1,133,454 - -0.0 1,133,467 + -1.7 1,133,500 - -1.3 1,133,572 + +0.5 1,133,587 + -0.9 1,133,745 + ECD_01069 0.38 +0.2 1,133,745 + ECD_01069 0.38 -0.2 1,133,846 + ECD_01069 0.62 +0.1 1,133,878 + ECD_01069 0.70 +1.3 1,133,933 + ECD_01069 0.83 +0.5 1,134,150 + ECD_01070 0.35 -0.0 1,134,410 + +0.8 1,134,423 + +0.1 1,134,483 + +0.9 1,134,876 + ECD_01071 0.65 -0.0 1,134,965 + ECD_01071 0.78 +0.6 1,134,965 + ECD_01071 0.78 +3.0 1,135,078 + +0.6 1,135,078 + +0.0 1,135,112 + +0.1 1,135,239 + -0.5 1,135,473 + ECD_01072 0.27 -0.5 1,135,484 + ECD_01072 0.28 -0.2 1,135,587 + ECD_01072 0.37 -1.0 1,135,675 + ECD_01072 0.44 +0.6 1,135,774 + ECD_01072 0.52 -1.6 1,135,774 + ECD_01072 0.52 +0.1 1,135,803 + ECD_01072 0.55 -1.1 1,135,875 + ECD_01072 0.61 -0.8 1,135,890 + ECD_01072 0.62 -2.8 1,135,962 + ECD_01072 0.68 -1.2 1,136,011 + ECD_01072 0.72 -0.1
Or see this region's nucleotide sequence