Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01065 and ECD_01066 are separated by 39 nucleotides ECD_01066 and ECD_01067 are separated by 4 nucleotides ECD_01067 and ECD_01068 are separated by 75 nucleotides ECD_01068 and ECD_01069 are separated by 154 nucleotides ECD_01069 and ECD_01070 are separated by 3 nucleotides ECD_01070 and ECD_01071 are separated by 11 nucleotides
ECD_01065: ECD_01065 - putative lipid II flippase, at 1,130,409 to 1,131,944
_01065
ECD_01066: ECD_01066 - export chaperone for FlgK and FlgL, at 1,131,984 to 1,132,400
_01066
ECD_01067: ECD_01067 - anti-sigma factor for FliA (sigma 28), at 1,132,405 to 1,132,698
_01067
ECD_01068: ECD_01068 - assembly protein for flagellar basal-body periplasmic P ring, at 1,132,774 to 1,133,433
_01068
ECD_01069: ECD_01069 - flagellar component of cell-proximal portion of basal-body rod, at 1,133,588 to 1,134,004
_01069
ECD_01070: ECD_01070 - flagellar component of cell-proximal portion of basal-body rod, at 1,134,008 to 1,134,412
_01070
ECD_01071: ECD_01071 - flagellar hook assembly protein, at 1,134,424 to 1,135,119
_01071
Position (kb)
1132
1133
1134 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1131.942 kb on + strand at 1132.045 kb on - strand, within ECD_01066 at 1132.125 kb on - strand, within ECD_01066 at 1132.197 kb on - strand, within ECD_01066 at 1132.275 kb on - strand, within ECD_01066 at 1132.311 kb on - strand, within ECD_01066 at 1132.401 kb on - strand at 1132.401 kb on - strand at 1132.411 kb on - strand at 1132.502 kb on - strand, within ECD_01067 at 1132.693 kb on - strand at 1132.740 kb on - strand at 1132.776 kb on - strand at 1132.776 kb on - strand at 1132.784 kb on - strand at 1132.784 kb on - strand at 1132.786 kb on - strand at 1133.145 kb on - strand, within ECD_01068 at 1133.162 kb on - strand, within ECD_01068 at 1133.178 kb on - strand, within ECD_01068 at 1133.290 kb on - strand, within ECD_01068 at 1133.381 kb on - strand at 1133.454 kb on - strand at 1133.467 kb on + strand at 1133.500 kb on - strand at 1133.572 kb on + strand at 1133.587 kb on + strand at 1133.745 kb on + strand, within ECD_01069 at 1133.745 kb on + strand, within ECD_01069 at 1133.846 kb on + strand, within ECD_01069 at 1133.878 kb on + strand, within ECD_01069 at 1133.933 kb on + strand, within ECD_01069 at 1134.150 kb on + strand, within ECD_01070 at 1134.410 kb on + strand at 1134.423 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10 remove 1,131,942 + -1.5 1,132,045 - ECD_01066 0.15 -0.3 1,132,125 - ECD_01066 0.34 -0.5 1,132,197 - ECD_01066 0.51 +0.1 1,132,275 - ECD_01066 0.70 -0.6 1,132,311 - ECD_01066 0.78 -2.0 1,132,401 - -0.7 1,132,401 - -1.4 1,132,411 - -0.3 1,132,502 - ECD_01067 0.33 -0.4 1,132,693 - -1.6 1,132,740 - -0.4 1,132,776 - +0.3 1,132,776 - +2.4 1,132,784 - -0.2 1,132,784 - -1.2 1,132,786 - +1.0 1,133,145 - ECD_01068 0.56 +0.5 1,133,162 - ECD_01068 0.59 +1.3 1,133,178 - ECD_01068 0.61 +0.5 1,133,290 - ECD_01068 0.78 -0.9 1,133,381 - +0.4 1,133,454 - +0.0 1,133,467 + -1.7 1,133,500 - -1.3 1,133,572 + +0.5 1,133,587 + -0.9 1,133,745 + ECD_01069 0.38 +0.2 1,133,745 + ECD_01069 0.38 -0.2 1,133,846 + ECD_01069 0.62 +0.1 1,133,878 + ECD_01069 0.70 +1.3 1,133,933 + ECD_01069 0.83 +0.5 1,134,150 + ECD_01070 0.35 -0.0 1,134,410 + +0.8 1,134,423 + +0.1
Or see this region's nucleotide sequence