Strain Fitness in Escherichia coli BL21 around ECD_01059

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01058 and ECD_01059 are separated by 105 nucleotidesECD_01059 and ECD_01060 are separated by 133 nucleotidesECD_01060 and ECD_01061 are separated by 63 nucleotides ECD_01058: ECD_01058 - dihydro-orotase, at 1,124,131 to 1,125,177 _01058 ECD_01059: ECD_01059 - lipoprotein, DUF1439 family, at 1,125,283 to 1,125,843 _01059 ECD_01060: ECD_01060 - glutaredoxin 2 (Grx2), at 1,125,977 to 1,126,624 _01060 ECD_01061: ECD_01061 - multidrug resistance efflux transporter conferring overexpression resistance to norfloxacin and enoxacin, at 1,126,688 to 1,127,896 _01061 Position (kb) 1125 1126Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1124.548 kb on - strand, within ECD_01058at 1124.618 kb on + strand, within ECD_01058at 1124.619 kb on - strand, within ECD_01058at 1124.939 kb on + strand, within ECD_01058at 1125.084 kb on - strandat 1125.387 kb on - strand, within ECD_01059at 1125.387 kb on - strand, within ECD_01059at 1125.387 kb on - strand, within ECD_01059at 1125.771 kb on - strand, within ECD_01059at 1125.787 kb on - strand, within ECD_01059at 1126.101 kb on - strand, within ECD_01060at 1126.186 kb on + strand, within ECD_01060at 1126.423 kb on - strand, within ECD_01060at 1126.452 kb on + strand, within ECD_01060at 1126.614 kb on + strandat 1126.614 kb on + strandat 1126.614 kb on + strandat 1126.614 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
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1,124,548 - ECD_01058 0.40 -0.4
1,124,618 + ECD_01058 0.47 +0.6
1,124,619 - ECD_01058 0.47 -0.2
1,124,939 + ECD_01058 0.77 -0.3
1,125,084 - -2.0
1,125,387 - ECD_01059 0.19 +1.2
1,125,387 - ECD_01059 0.19 +3.9
1,125,387 - ECD_01059 0.19 +2.4
1,125,771 - ECD_01059 0.87 +0.4
1,125,787 - ECD_01059 0.90 +2.9
1,126,101 - ECD_01060 0.19 -0.5
1,126,186 + ECD_01060 0.32 +2.7
1,126,423 - ECD_01060 0.69 -2.1
1,126,452 + ECD_01060 0.73 -0.5
1,126,614 + +0.3
1,126,614 + +0.1
1,126,614 + -0.7
1,126,614 + -0.4

Or see this region's nucleotide sequence