Strain Fitness in Escherichia coli BL21 around ECD_01056

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01055 and ECD_01056 are separated by 114 nucleotidesECD_01056 and ECD_01057 are separated by 289 nucleotidesECD_01057 and ECD_01058 are separated by 73 nucleotides ECD_01055: ECD_01055 - N-methyltryptophan oxidase, FAD-binding, at 1,122,035 to 1,123,153 _01055 ECD_01056: ECD_01056 - biofilm regulator, at 1,123,268 to 1,123,522 _01056 ECD_01057: ECD_01057 - DNA damage-inducible protein I, at 1,123,812 to 1,124,057 _01057 ECD_01058: ECD_01058 - dihydro-orotase, at 1,124,131 to 1,125,177 _01058 Position (kb) 1123 1124Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1122.365 kb on - strand, within ECD_01055at 1122.609 kb on - strand, within ECD_01055at 1122.750 kb on + strand, within ECD_01055at 1122.751 kb on - strand, within ECD_01055at 1122.976 kb on - strand, within ECD_01055at 1123.270 kb on - strandat 1123.270 kb on - strandat 1123.412 kb on - strand, within ECD_01056at 1123.453 kb on - strand, within ECD_01056at 1123.453 kb on - strand, within ECD_01056at 1123.453 kb on - strand, within ECD_01056at 1123.457 kb on - strand, within ECD_01056at 1123.457 kb on - strand, within ECD_01056at 1123.547 kb on - strandat 1124.058 kb on - strandat 1124.106 kb on + strandat 1124.106 kb on + strandat 1124.106 kb on + strandat 1124.230 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
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1,122,365 - ECD_01055 0.29 -0.4
1,122,609 - ECD_01055 0.51 -2.1
1,122,750 + ECD_01055 0.64 -1.3
1,122,751 - ECD_01055 0.64 +0.3
1,122,976 - ECD_01055 0.84 -0.7
1,123,270 - +0.1
1,123,270 - -0.8
1,123,412 - ECD_01056 0.56 +0.7
1,123,453 - ECD_01056 0.73 +2.1
1,123,453 - ECD_01056 0.73 -0.6
1,123,453 - ECD_01056 0.73 +0.5
1,123,457 - ECD_01056 0.74 -0.2
1,123,457 - ECD_01056 0.74 +1.9
1,123,547 - +0.2
1,124,058 - +0.8
1,124,106 + -0.3
1,124,106 + +0.1
1,124,106 + -2.9
1,124,230 + -1.3

Or see this region's nucleotide sequence