Strain Fitness in Escherichia coli BL21 around ECD_01020

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01019 and ECD_01020 are separated by 57 nucleotidesECD_01020 and ECD_01021 are separated by 5 nucleotides ECD_01019: ECD_01019 - putative membrane protein, at 1,085,629 to 1,086,468 _01019 ECD_01020: ECD_01020 - inactive ferrous ion transporter EfeUOB, at 1,086,526 to 1,087,653 _01020 ECD_01021: ECD_01021 - deferrrochelatase, periplasmic, at 1,087,659 to 1,088,930 _01021 Position (kb) 1086 1087 1088Strain fitness (log2 ratio) -1 0 1 2 3at 1085.602 kb on + strandat 1085.658 kb on + strandat 1085.659 kb on - strandat 1085.710 kb on + strandat 1085.710 kb on + strandat 1086.114 kb on + strand, within ECD_01019at 1086.291 kb on + strand, within ECD_01019at 1086.473 kb on + strandat 1086.473 kb on + strandat 1086.516 kb on + strandat 1086.825 kb on + strand, within ECD_01020at 1086.940 kb on + strand, within ECD_01020at 1086.940 kb on + strand, within ECD_01020at 1086.949 kb on + strand, within ECD_01020at 1086.949 kb on + strand, within ECD_01020at 1086.949 kb on + strand, within ECD_01020at 1087.064 kb on - strand, within ECD_01020at 1087.244 kb on - strand, within ECD_01020at 1087.245 kb on + strand, within ECD_01020at 1087.245 kb on + strand, within ECD_01020at 1087.404 kb on + strand, within ECD_01020at 1087.525 kb on + strand, within ECD_01020at 1087.600 kb on - strandat 1087.665 kb on + strandat 1087.667 kb on + strandat 1087.668 kb on - strandat 1088.194 kb on + strand, within ECD_01021at 1088.243 kb on + strand, within ECD_01021at 1088.321 kb on + strand, within ECD_01021at 1088.463 kb on + strand, within ECD_01021at 1088.473 kb on + strand, within ECD_01021

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
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1,085,602 + +0.6
1,085,658 + +1.7
1,085,659 - +0.5
1,085,710 + +2.3
1,085,710 + +1.2
1,086,114 + ECD_01019 0.58 +0.7
1,086,291 + ECD_01019 0.79 +1.5
1,086,473 + +0.5
1,086,473 + +1.0
1,086,516 + -0.4
1,086,825 + ECD_01020 0.27 +1.3
1,086,940 + ECD_01020 0.37 +0.6
1,086,940 + ECD_01020 0.37 -0.8
1,086,949 + ECD_01020 0.38 +0.8
1,086,949 + ECD_01020 0.38 +0.1
1,086,949 + ECD_01020 0.38 +1.2
1,087,064 - ECD_01020 0.48 -1.5
1,087,244 - ECD_01020 0.64 -1.2
1,087,245 + ECD_01020 0.64 +0.2
1,087,245 + ECD_01020 0.64 +0.7
1,087,404 + ECD_01020 0.78 +0.6
1,087,525 + ECD_01020 0.89 +2.8
1,087,600 - -0.9
1,087,665 + +0.8
1,087,667 + +1.0
1,087,668 - +2.3
1,088,194 + ECD_01021 0.42 -0.3
1,088,243 + ECD_01021 0.46 -0.2
1,088,321 + ECD_01021 0.52 +1.5
1,088,463 + ECD_01021 0.63 +0.6
1,088,473 + ECD_01021 0.64 +1.1

Or see this region's nucleotide sequence