Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01019 and ECD_01020 are separated by 57 nucleotides ECD_01020 and ECD_01021 are separated by 5 nucleotides
ECD_01019: ECD_01019 - putative membrane protein, at 1,085,629 to 1,086,468
_01019
ECD_01020: ECD_01020 - inactive ferrous ion transporter EfeUOB, at 1,086,526 to 1,087,653
_01020
ECD_01021: ECD_01021 - deferrrochelatase, periplasmic, at 1,087,659 to 1,088,930
_01021
Position (kb)
1086
1087
1088 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1085.602 kb on + strand at 1085.658 kb on + strand at 1085.659 kb on - strand at 1085.710 kb on + strand at 1085.710 kb on + strand at 1086.114 kb on + strand, within ECD_01019 at 1086.291 kb on + strand, within ECD_01019 at 1086.473 kb on + strand at 1086.473 kb on + strand at 1086.516 kb on + strand at 1086.825 kb on + strand, within ECD_01020 at 1086.940 kb on + strand, within ECD_01020 at 1086.940 kb on + strand, within ECD_01020 at 1086.949 kb on + strand, within ECD_01020 at 1086.949 kb on + strand, within ECD_01020 at 1086.949 kb on + strand, within ECD_01020 at 1087.064 kb on - strand, within ECD_01020 at 1087.244 kb on - strand, within ECD_01020 at 1087.245 kb on + strand, within ECD_01020 at 1087.245 kb on + strand, within ECD_01020 at 1087.404 kb on + strand, within ECD_01020 at 1087.525 kb on + strand, within ECD_01020 at 1087.600 kb on - strand at 1087.665 kb on + strand at 1087.667 kb on + strand at 1087.668 kb on - strand at 1088.194 kb on + strand, within ECD_01021 at 1088.243 kb on + strand, within ECD_01021 at 1088.321 kb on + strand, within ECD_01021 at 1088.463 kb on + strand, within ECD_01021 at 1088.473 kb on + strand, within ECD_01021
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10 remove 1,085,602 + +0.6 1,085,658 + +1.7 1,085,659 - +0.5 1,085,710 + +2.3 1,085,710 + +1.2 1,086,114 + ECD_01019 0.58 +0.7 1,086,291 + ECD_01019 0.79 +1.5 1,086,473 + +0.5 1,086,473 + +1.0 1,086,516 + -0.4 1,086,825 + ECD_01020 0.27 +1.3 1,086,940 + ECD_01020 0.37 +0.6 1,086,940 + ECD_01020 0.37 -0.8 1,086,949 + ECD_01020 0.38 +0.8 1,086,949 + ECD_01020 0.38 +0.1 1,086,949 + ECD_01020 0.38 +1.2 1,087,064 - ECD_01020 0.48 -1.5 1,087,244 - ECD_01020 0.64 -1.2 1,087,245 + ECD_01020 0.64 +0.2 1,087,245 + ECD_01020 0.64 +0.7 1,087,404 + ECD_01020 0.78 +0.6 1,087,525 + ECD_01020 0.89 +2.8 1,087,600 - -0.9 1,087,665 + +0.8 1,087,667 + +1.0 1,087,668 - +2.3 1,088,194 + ECD_01021 0.42 -0.3 1,088,243 + ECD_01021 0.46 -0.2 1,088,321 + ECD_01021 0.52 +1.5 1,088,463 + ECD_01021 0.63 +0.6 1,088,473 + ECD_01021 0.64 +1.1
Or see this region's nucleotide sequence