Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00969 and ECD_00970 are separated by 44 nucleotides ECD_00970 and ECD_00971 are separated by 57 nucleotides ECD_00971 and ECD_00972 are separated by 94 nucleotides ECD_00972 and ECD_00973 overlap by 4 nucleotides ECD_00973 and ECD_00974 are separated by 90 nucleotides
ECD_00969: ECD_00969 - putative CoA-binding protein, at 1,033,035 to 1,033,448
_00969
ECD_00970: ECD_00970 - heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA-binding protein, at 1,033,493 to 1,033,810
_00970
ECD_00971: ECD_00971 - 23S rRNA m(5)C1962 methyltransferase, SAM-dependent, at 1,033,868 to 1,035,058
_00971
ECD_00972: ECD_00972 - weak acylphosphatase, at 1,035,153 to 1,035,431
_00972
ECD_00973: ECD_00973 - mnm(5)-s(2)U34-tRNA 2-thiolation sulfurtransferase, at 1,035,428 to 1,035,757
_00973
ECD_00974: ECD_00974 - Modulator of FtsH protease, inner membrane protein, at 1,035,848 to 1,036,507
_00974
Position (kb) 1033
1034
1035
1036 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1032.974 kb on + strand at 1033.137 kb on + strand, within ECD_00969 at 1033.304 kb on + strand, within ECD_00969 at 1033.495 kb on - strand at 1033.593 kb on - strand, within ECD_00970 at 1033.593 kb on - strand, within ECD_00970 at 1033.593 kb on - strand, within ECD_00970 at 1033.593 kb on - strand, within ECD_00970 at 1033.842 kb on - strand at 1033.842 kb on - strand at 1033.869 kb on + strand at 1033.900 kb on - strand at 1033.915 kb on - strand at 1034.104 kb on + strand, within ECD_00971 at 1034.105 kb on - strand, within ECD_00971 at 1034.105 kb on - strand, within ECD_00971 at 1034.203 kb on + strand, within ECD_00971 at 1034.203 kb on + strand, within ECD_00971 at 1034.204 kb on - strand, within ECD_00971 at 1034.204 kb on - strand, within ECD_00971 at 1034.370 kb on + strand, within ECD_00971 at 1034.573 kb on - strand, within ECD_00971 at 1034.713 kb on + strand, within ECD_00971 at 1034.714 kb on - strand, within ECD_00971 at 1034.714 kb on - strand, within ECD_00971 at 1034.755 kb on - strand, within ECD_00971 at 1035.169 kb on + strand at 1035.935 kb on - strand, within ECD_00974 at 1035.937 kb on - strand, within ECD_00974 at 1035.937 kb on - strand, within ECD_00974
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10 remove 1,032,974 + +1.9 1,033,137 + ECD_00969 0.25 -0.0 1,033,304 + ECD_00969 0.65 +0.1 1,033,495 - +1.4 1,033,593 - ECD_00970 0.31 +3.1 1,033,593 - ECD_00970 0.31 +1.3 1,033,593 - ECD_00970 0.31 +1.2 1,033,593 - ECD_00970 0.31 +0.9 1,033,842 - +0.8 1,033,842 - +1.0 1,033,869 + -1.9 1,033,900 - -0.4 1,033,915 - -0.6 1,034,104 + ECD_00971 0.20 -0.5 1,034,105 - ECD_00971 0.20 -2.4 1,034,105 - ECD_00971 0.20 -1.0 1,034,203 + ECD_00971 0.28 +0.6 1,034,203 + ECD_00971 0.28 -1.9 1,034,204 - ECD_00971 0.28 -2.4 1,034,204 - ECD_00971 0.28 -0.6 1,034,370 + ECD_00971 0.42 -1.9 1,034,573 - ECD_00971 0.59 -0.4 1,034,713 + ECD_00971 0.71 -1.5 1,034,714 - ECD_00971 0.71 -0.8 1,034,714 - ECD_00971 0.71 +0.1 1,034,755 - ECD_00971 0.74 -0.2 1,035,169 + -1.6 1,035,935 - ECD_00974 0.13 -3.4 1,035,937 - ECD_00974 0.13 -1.9 1,035,937 - ECD_00974 0.13 -0.8
Or see this region's nucleotide sequence