Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00947 and ECD_00948 overlap by 8 nucleotides ECD_00948 and ECD_00949 are separated by 110 nucleotides ECD_00949 and ECD_00950 are separated by 173 nucleotides ECD_00950 and ECD_00951 overlap by 4 nucleotides
ECD_00947: ECD_00947 - putative fimbrial-like adhesin protein, at 1,008,528 to 1,009,043
_00947
ECD_00948: ECD_00948 - putative periplasmic pilin chaperone, at 1,009,036 to 1,009,746
_00948
ECD_00949: ECD_00949 - dihydro-orotate oxidase, FMN-linked, at 1,009,857 to 1,010,867
_00949
ECD_00950: ECD_00950 - FtsZ stabilizer, at 1,011,041 to 1,011,583
_00950
ECD_00951: ECD_00951 - 6-N-hydroxylaminopurine detoxification oxidoreductase, at 1,011,580 to 1,012,689
_00951
Position (kb)
1009
1010
1011 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1008.932 kb on - strand, within ECD_00947 at 1009.044 kb on + strand at 1009.209 kb on + strand, within ECD_00948 at 1009.293 kb on + strand, within ECD_00948 at 1009.505 kb on - strand, within ECD_00948 at 1009.541 kb on + strand, within ECD_00948 at 1009.592 kb on + strand, within ECD_00948 at 1010.250 kb on + strand, within ECD_00949 at 1010.487 kb on + strand, within ECD_00949 at 1010.570 kb on + strand, within ECD_00949 at 1011.126 kb on + strand, within ECD_00950 at 1011.618 kb on + strand at 1011.619 kb on - strand at 1011.781 kb on - strand, within ECD_00951 at 1011.781 kb on - strand, within ECD_00951
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10 remove 1,008,932 - ECD_00947 0.78 +1.9 1,009,044 + -1.6 1,009,209 + ECD_00948 0.24 +0.0 1,009,293 + ECD_00948 0.36 -0.0 1,009,505 - ECD_00948 0.66 -0.2 1,009,541 + ECD_00948 0.71 -2.8 1,009,592 + ECD_00948 0.78 -1.0 1,010,250 + ECD_00949 0.39 -2.8 1,010,487 + ECD_00949 0.62 -1.8 1,010,570 + ECD_00949 0.71 -1.7 1,011,126 + ECD_00950 0.16 -1.0 1,011,618 + -0.7 1,011,619 - -1.8 1,011,781 - ECD_00951 0.18 -0.3 1,011,781 - ECD_00951 0.18 -1.5
Or see this region's nucleotide sequence