Strain Fitness in Escherichia coli BL21 around ECD_00808

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00806 and ECD_00807 are separated by 46 nucleotidesECD_00807 and ECD_00808 are separated by 57 nucleotidesECD_00808 and ECD_00809 are separated by 284 nucleotides ECD_00806: ECD_00806 - D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a, at 864,646 to 865,848 _00806 ECD_00807: ECD_00807 - deoxyribose-5-phosphate-inducible deoxyribose operon transcriptional repressor; repressor of nupG and tsx, at 865,895 to 866,653 _00807 ECD_00808: ECD_00808 - undecaprenyl pyrophosphate phosphatase, at 866,711 to 867,307 _00808 ECD_00809: ECD_00809 - multidrug efflux system protein, at 867,592 to 868,824 _00809 Position (kb) 866 867 868Strain fitness (log2 ratio) -3 -2 -1 0 1at 865.889 kb on - strandat 865.889 kb on - strandat 865.896 kb on + strandat 865.900 kb on - strandat 865.900 kb on - strandat 865.938 kb on + strandat 865.939 kb on - strandat 865.939 kb on - strandat 865.939 kb on - strandat 865.939 kb on - strandat 866.451 kb on - strand, within ECD_00807at 866.594 kb on - strandat 866.671 kb on - strandat 866.691 kb on - strandat 866.691 kb on - strandat 866.691 kb on - strandat 866.789 kb on - strand, within ECD_00808at 866.822 kb on - strand, within ECD_00808at 866.837 kb on - strand, within ECD_00808at 866.958 kb on - strand, within ECD_00808at 867.364 kb on - strandat 867.376 kb on - strandat 867.401 kb on - strandat 867.473 kb on + strandat 867.474 kb on - strandat 867.493 kb on + strandat 867.679 kb on + strandat 867.679 kb on + strandat 867.679 kb on + strandat 867.680 kb on - strandat 867.680 kb on - strandat 867.708 kb on + strandat 867.708 kb on + strandat 867.756 kb on + strand, within ECD_00809at 867.795 kb on - strand, within ECD_00809at 867.941 kb on + strand, within ECD_00809at 868.055 kb on + strand, within ECD_00809at 868.186 kb on - strand, within ECD_00809at 868.187 kb on + strand, within ECD_00809at 868.226 kb on - strand, within ECD_00809at 868.227 kb on + strand, within ECD_00809at 868.227 kb on + strand, within ECD_00809at 868.227 kb on + strand, within ECD_00809at 868.227 kb on + strand, within ECD_00809at 868.228 kb on - strand, within ECD_00809

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
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865,889 - -0.2
865,889 - +1.7
865,896 + -2.1
865,900 - -3.0
865,900 - -0.1
865,938 + -1.8
865,939 - -0.2
865,939 - +0.3
865,939 - -0.7
865,939 - -0.6
866,451 - ECD_00807 0.73 +1.2
866,594 - -0.0
866,671 - -0.1
866,691 - +0.8
866,691 - +1.4
866,691 - -0.7
866,789 - ECD_00808 0.13 -1.6
866,822 - ECD_00808 0.19 -0.3
866,837 - ECD_00808 0.21 +0.8
866,958 - ECD_00808 0.41 +0.5
867,364 - +1.3
867,376 - +0.2
867,401 - +1.4
867,473 + -1.6
867,474 - -0.3
867,493 + +0.8
867,679 + +1.1
867,679 + +0.8
867,679 + +0.8
867,680 - -1.2
867,680 - +0.4
867,708 + +0.5
867,708 + +0.5
867,756 + ECD_00809 0.13 -1.5
867,795 - ECD_00809 0.16 -1.7
867,941 + ECD_00809 0.28 +0.1
868,055 + ECD_00809 0.38 +0.3
868,186 - ECD_00809 0.48 +0.4
868,187 + ECD_00809 0.48 +1.2
868,226 - ECD_00809 0.51 -0.9
868,227 + ECD_00809 0.52 +0.6
868,227 + ECD_00809 0.52 +0.5
868,227 + ECD_00809 0.52 -0.5
868,227 + ECD_00809 0.52 +1.0
868,228 - ECD_00809 0.52 -1.6

Or see this region's nucleotide sequence