Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00745 and ECD_00746 are separated by 578 nucleotides ECD_00746 and ECD_00747 are separated by 191 nucleotides
ECD_00745: ECD_00745 - dethiobiotin synthetase, at 796,263 to 796,940
_00745
ECD_00746: ECD_00746 - exision nuclease of nucleotide excision repair, DNA damage recognition component, at 797,519 to 799,540
_00746
ECD_00747: ECD_00747 - putative CofD superfamily transferase, at 799,732 to 800,640
_00747
Position (kb) 797
798
799
800 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 796.696 kb on + strand, within ECD_00745 at 796.718 kb on + strand, within ECD_00745 at 796.719 kb on - strand, within ECD_00745 at 796.721 kb on + strand, within ECD_00745 at 796.751 kb on - strand, within ECD_00745 at 796.825 kb on - strand, within ECD_00745 at 796.825 kb on - strand, within ECD_00745 at 796.826 kb on + strand, within ECD_00745 at 796.950 kb on - strand at 796.950 kb on - strand at 797.165 kb on + strand at 797.462 kb on + strand at 797.462 kb on + strand at 797.466 kb on + strand at 797.481 kb on + strand at 797.481 kb on + strand at 797.703 kb on + strand at 797.703 kb on + strand at 797.704 kb on - strand at 797.738 kb on + strand, within ECD_00746 at 797.804 kb on + strand, within ECD_00746 at 797.819 kb on + strand, within ECD_00746 at 797.819 kb on + strand, within ECD_00746 at 797.819 kb on + strand, within ECD_00746 at 797.820 kb on - strand, within ECD_00746 at 797.820 kb on - strand, within ECD_00746 at 797.976 kb on + strand, within ECD_00746 at 798.117 kb on + strand, within ECD_00746 at 798.117 kb on + strand, within ECD_00746 at 798.117 kb on + strand, within ECD_00746 at 798.118 kb on - strand, within ECD_00746 at 798.121 kb on + strand, within ECD_00746 at 798.443 kb on + strand, within ECD_00746 at 798.443 kb on + strand, within ECD_00746 at 798.570 kb on - strand, within ECD_00746 at 798.689 kb on + strand, within ECD_00746 at 798.714 kb on - strand, within ECD_00746 at 798.941 kb on + strand, within ECD_00746 at 798.955 kb on + strand, within ECD_00746 at 799.032 kb on + strand, within ECD_00746 at 799.151 kb on - strand, within ECD_00746 at 799.595 kb on + strand at 799.596 kb on - strand at 799.767 kb on + strand at 799.905 kb on - strand, within ECD_00747 at 799.905 kb on - strand, within ECD_00747 at 799.985 kb on + strand, within ECD_00747 at 799.986 kb on - strand, within ECD_00747 at 800.060 kb on + strand, within ECD_00747 at 800.149 kb on + strand, within ECD_00747 at 800.149 kb on + strand, within ECD_00747 at 800.149 kb on + strand, within ECD_00747 at 800.284 kb on - strand, within ECD_00747 at 800.320 kb on - strand, within ECD_00747 at 800.512 kb on - strand, within ECD_00747
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10 remove 796,696 + ECD_00745 0.64 -0.5 796,718 + ECD_00745 0.67 -0.7 796,719 - ECD_00745 0.67 -2.1 796,721 + ECD_00745 0.68 +0.3 796,751 - ECD_00745 0.72 -0.4 796,825 - ECD_00745 0.83 +1.1 796,825 - ECD_00745 0.83 -0.7 796,826 + ECD_00745 0.83 -1.1 796,950 - +1.7 796,950 - -0.4 797,165 + +0.4 797,462 + -1.3 797,462 + +0.0 797,466 + -0.8 797,481 + +0.1 797,481 + -1.2 797,703 + +1.4 797,703 + -1.7 797,704 - -0.5 797,738 + ECD_00746 0.11 +0.1 797,804 + ECD_00746 0.14 -1.0 797,819 + ECD_00746 0.15 -0.9 797,819 + ECD_00746 0.15 -0.9 797,819 + ECD_00746 0.15 +0.2 797,820 - ECD_00746 0.15 -1.5 797,820 - ECD_00746 0.15 -2.2 797,976 + ECD_00746 0.23 -0.9 798,117 + ECD_00746 0.30 +0.8 798,117 + ECD_00746 0.30 +0.4 798,117 + ECD_00746 0.30 -0.9 798,118 - ECD_00746 0.30 -1.3 798,121 + ECD_00746 0.30 -0.2 798,443 + ECD_00746 0.46 -0.2 798,443 + ECD_00746 0.46 +0.5 798,570 - ECD_00746 0.52 -1.3 798,689 + ECD_00746 0.58 -0.9 798,714 - ECD_00746 0.59 -0.8 798,941 + ECD_00746 0.70 +0.3 798,955 + ECD_00746 0.71 +0.1 799,032 + ECD_00746 0.75 -2.8 799,151 - ECD_00746 0.81 -1.0 799,595 + +1.0 799,596 - -2.3 799,767 + -0.6 799,905 - ECD_00747 0.19 -0.7 799,905 - ECD_00747 0.19 -0.8 799,985 + ECD_00747 0.28 -2.0 799,986 - ECD_00747 0.28 -0.1 800,060 + ECD_00747 0.36 -2.2 800,149 + ECD_00747 0.46 -1.6 800,149 + ECD_00747 0.46 +1.4 800,149 + ECD_00747 0.46 -2.8 800,284 - ECD_00747 0.61 +0.2 800,320 - ECD_00747 0.65 +0.2 800,512 - ECD_00747 0.86 +0.7
Or see this region's nucleotide sequence