Strain Fitness in Escherichia coli BL21 around ECD_00687

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00686 and ECD_00687 are separated by 365 nucleotidesECD_00687 and ECD_00688 overlap by 1 nucleotidesECD_00688 and ECD_00689 are separated by 103 nucleotides ECD_00686: ECD_00686 - dihydrolipoyltranssuccinase, at 720,092 to 721,309 _00686 ECD_00687: ECD_00687 - succinyl-CoA synthetase, beta subunit, at 721,675 to 722,841 _00687 ECD_00688: ECD_00688 - succinyl-CoA synthetase, NAD(P)-binding, alpha subunit, at 722,841 to 723,710 _00688 ECD_00689: ECD_00689 - transcriptional repressor for the mannosyl-D-glycerate catabolic operon, at 723,814 to 724,536 _00689 Position (kb) 721 722 723Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 721.307 kb on + strandat 721.307 kb on + strandat 721.308 kb on - strandat 721.310 kb on + strandat 721.310 kb on + strandat 721.311 kb on - strandat 721.316 kb on - strandat 721.333 kb on + strandat 721.398 kb on - strandat 721.422 kb on + strandat 721.488 kb on - strandat 721.513 kb on + strandat 721.514 kb on - strandat 721.624 kb on - strandat 721.633 kb on - strandat 721.749 kb on + strandat 721.753 kb on - strandat 721.925 kb on - strand, within ECD_00687at 721.999 kb on + strand, within ECD_00687at 722.022 kb on + strand, within ECD_00687at 722.146 kb on + strand, within ECD_00687at 722.187 kb on + strand, within ECD_00687at 722.428 kb on + strand, within ECD_00687at 722.446 kb on - strand, within ECD_00687at 722.714 kb on + strand, within ECD_00687at 722.775 kb on + strandat 722.839 kb on + strandat 722.840 kb on - strandat 722.840 kb on - strandat 722.939 kb on + strand, within ECD_00688at 722.956 kb on + strand, within ECD_00688at 723.054 kb on + strand, within ECD_00688at 723.054 kb on + strand, within ECD_00688at 723.054 kb on + strand, within ECD_00688at 723.054 kb on + strand, within ECD_00688at 723.054 kb on + strand, within ECD_00688at 723.054 kb on + strand, within ECD_00688at 723.054 kb on + strand, within ECD_00688at 723.055 kb on - strand, within ECD_00688at 723.058 kb on + strand, within ECD_00688at 723.120 kb on - strand, within ECD_00688at 723.315 kb on + strand, within ECD_00688at 723.537 kb on + strand, within ECD_00688at 723.537 kb on + strand, within ECD_00688at 723.573 kb on - strand, within ECD_00688at 723.708 kb on + strandat 723.718 kb on + strandat 723.728 kb on + strandat 723.794 kb on + strandat 723.794 kb on + strandat 723.794 kb on + strandat 723.795 kb on - strandat 723.795 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
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721,307 + +1.7
721,307 + +0.7
721,308 - -0.7
721,310 + +0.8
721,310 + +1.0
721,311 - +1.1
721,316 - -0.4
721,333 + +1.0
721,398 - +0.6
721,422 + +1.0
721,488 - +0.4
721,513 + +0.4
721,514 - +0.9
721,624 - -0.4
721,633 - -0.4
721,749 + +0.5
721,753 - +0.1
721,925 - ECD_00687 0.21 -2.9
721,999 + ECD_00687 0.28 +1.0
722,022 + ECD_00687 0.30 -0.8
722,146 + ECD_00687 0.40 +2.2
722,187 + ECD_00687 0.44 -0.1
722,428 + ECD_00687 0.65 +1.0
722,446 - ECD_00687 0.66 +0.3
722,714 + ECD_00687 0.89 +1.4
722,775 + +0.3
722,839 + -1.0
722,840 - -1.8
722,840 - -1.2
722,939 + ECD_00688 0.11 -0.0
722,956 + ECD_00688 0.13 +1.1
723,054 + ECD_00688 0.24 -0.0
723,054 + ECD_00688 0.24 +0.6
723,054 + ECD_00688 0.24 +1.4
723,054 + ECD_00688 0.24 -0.1
723,054 + ECD_00688 0.24 +0.9
723,054 + ECD_00688 0.24 -0.1
723,054 + ECD_00688 0.24 -0.5
723,055 - ECD_00688 0.25 +1.0
723,058 + ECD_00688 0.25 +1.2
723,120 - ECD_00688 0.32 -0.6
723,315 + ECD_00688 0.54 -0.1
723,537 + ECD_00688 0.80 -0.1
723,537 + ECD_00688 0.80 +0.2
723,573 - ECD_00688 0.84 -0.9
723,708 + +0.7
723,718 + +0.5
723,728 + +0.8
723,794 + -1.2
723,794 + -1.6
723,794 + -0.3
723,795 - -1.0
723,795 - +0.1

Or see this region's nucleotide sequence