Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00633 and ECD_00634 are separated by 8 nucleotides ECD_00634 and ECD_00635 are separated by 59 nucleotides
ECD_00633: ECD_00633 - N-acetylglucosamine-inducible nag divergent operon transcriptional repressor, at 660,248 to 661,468
_00633
ECD_00634: ECD_00634 - N-acetylglucosamine-6-phosphate deacetylase, at 661,477 to 662,625
_00634
ECD_00635: ECD_00635 - glucosamine-6-phosphate deaminase, at 662,685 to 663,485
_00635
Position (kb) 661
662
663 Strain fitness (log2 ratio) -2
-1
0
1 at 660.519 kb on + strand, within ECD_00633 at 660.519 kb on + strand, within ECD_00633 at 660.519 kb on + strand, within ECD_00633 at 660.911 kb on - strand, within ECD_00633 at 660.933 kb on - strand, within ECD_00633 at 661.050 kb on + strand, within ECD_00633 at 661.055 kb on - strand, within ECD_00633 at 661.150 kb on + strand, within ECD_00633 at 661.313 kb on - strand, within ECD_00633 at 661.415 kb on - strand at 661.415 kb on - strand at 661.443 kb on - strand at 661.469 kb on - strand at 661.469 kb on - strand at 661.469 kb on - strand at 661.561 kb on - strand at 661.672 kb on - strand, within ECD_00634 at 661.749 kb on - strand, within ECD_00634 at 661.749 kb on - strand, within ECD_00634 at 661.751 kb on - strand, within ECD_00634 at 661.891 kb on - strand, within ECD_00634 at 661.902 kb on - strand, within ECD_00634 at 661.974 kb on - strand, within ECD_00634 at 662.329 kb on - strand, within ECD_00634 at 662.347 kb on - strand, within ECD_00634 at 662.396 kb on - strand, within ECD_00634 at 662.827 kb on - strand, within ECD_00635 at 662.912 kb on + strand, within ECD_00635 at 662.913 kb on - strand, within ECD_00635 at 662.913 kb on - strand, within ECD_00635 at 663.104 kb on - strand, within ECD_00635 at 663.265 kb on + strand, within ECD_00635 at 663.340 kb on + strand, within ECD_00635 at 663.509 kb on + strand at 663.509 kb on + strand at 663.542 kb on - strand at 663.618 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10 remove 660,519 + ECD_00633 0.22 -0.7 660,519 + ECD_00633 0.22 -1.4 660,519 + ECD_00633 0.22 +0.4 660,911 - ECD_00633 0.54 -0.3 660,933 - ECD_00633 0.56 -0.6 661,050 + ECD_00633 0.66 -0.5 661,055 - ECD_00633 0.66 +1.3 661,150 + ECD_00633 0.74 -0.5 661,313 - ECD_00633 0.87 +0.4 661,415 - -1.0 661,415 - +0.4 661,443 - +1.4 661,469 - -0.2 661,469 - +0.1 661,469 - +0.2 661,561 - -1.2 661,672 - ECD_00634 0.17 -1.7 661,749 - ECD_00634 0.24 -1.9 661,749 - ECD_00634 0.24 -2.3 661,751 - ECD_00634 0.24 -0.9 661,891 - ECD_00634 0.36 -0.2 661,902 - ECD_00634 0.37 -1.3 661,974 - ECD_00634 0.43 -2.3 662,329 - ECD_00634 0.74 -0.3 662,347 - ECD_00634 0.76 -1.2 662,396 - ECD_00634 0.80 -2.2 662,827 - ECD_00635 0.18 -1.9 662,912 + ECD_00635 0.28 -0.9 662,913 - ECD_00635 0.28 +0.6 662,913 - ECD_00635 0.28 +0.3 663,104 - ECD_00635 0.52 -1.9 663,265 + ECD_00635 0.72 -1.7 663,340 + ECD_00635 0.82 -1.4 663,509 + +0.8 663,509 + -1.3 663,542 - +0.9 663,618 + +0.8
Or see this region's nucleotide sequence