Strain Fitness in Escherichia coli BL21 around ECD_00414

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00413 and ECD_00414 are separated by 22 nucleotidesECD_00414 and ECD_00415 are separated by 141 nucleotidesECD_00415 and ECD_00416 are separated by 127 nucleotides ECD_00413: ECD_00413 - multidrug efflux system protein, at 450,300 to 453,449 _00413 ECD_00414: ECD_00414 - multidrug efflux system, at 453,472 to 454,665 _00414 ECD_00415: ECD_00415 - transcriptional repressor, at 454,807 to 455,454 _00415 ECD_00416: ECD_00416 - mechanosensitive channel protein, intermediate conductance, K+ regulated, at 455,582 to 458,944 _00416 Position (kb) 453 454 455Strain fitness (log2 ratio) -2 -1 0 1 2at 452.627 kb on - strand, within ECD_00413at 452.748 kb on - strand, within ECD_00413at 452.905 kb on + strand, within ECD_00413at 452.981 kb on - strand, within ECD_00413at 453.159 kb on - strandat 453.221 kb on - strandat 453.221 kb on - strandat 453.221 kb on - strandat 453.221 kb on - strandat 453.221 kb on - strandat 453.221 kb on - strandat 453.221 kb on - strandat 453.221 kb on - strandat 453.246 kb on - strandat 453.342 kb on - strandat 453.455 kb on - strandat 453.468 kb on + strandat 453.474 kb on - strandat 453.474 kb on - strandat 453.584 kb on - strandat 453.584 kb on - strandat 453.584 kb on - strandat 453.584 kb on - strandat 453.584 kb on - strandat 453.692 kb on - strand, within ECD_00414at 453.847 kb on - strand, within ECD_00414at 454.028 kb on + strand, within ECD_00414at 454.028 kb on + strand, within ECD_00414at 454.029 kb on - strand, within ECD_00414at 454.082 kb on - strand, within ECD_00414at 454.082 kb on - strand, within ECD_00414at 454.111 kb on - strand, within ECD_00414at 454.111 kb on - strand, within ECD_00414at 454.148 kb on + strand, within ECD_00414at 454.239 kb on - strand, within ECD_00414at 454.239 kb on - strand, within ECD_00414at 454.239 kb on - strand, within ECD_00414at 454.256 kb on + strand, within ECD_00414at 454.352 kb on + strand, within ECD_00414at 454.353 kb on - strand, within ECD_00414at 454.353 kb on - strand, within ECD_00414at 454.353 kb on - strand, within ECD_00414at 454.365 kb on - strand, within ECD_00414at 454.365 kb on - strand, within ECD_00414at 454.538 kb on - strand, within ECD_00414at 454.538 kb on - strand, within ECD_00414at 454.541 kb on - strand, within ECD_00414at 454.669 kb on + strandat 454.670 kb on - strandat 454.670 kb on - strandat 454.670 kb on - strandat 454.713 kb on + strandat 454.714 kb on - strandat 454.734 kb on + strandat 454.735 kb on - strandat 454.735 kb on - strandat 454.736 kb on + strandat 454.737 kb on - strandat 454.759 kb on + strandat 454.759 kb on + strandat 454.792 kb on + strandat 454.806 kb on + strandat 454.807 kb on - strandat 455.024 kb on + strand, within ECD_00415at 455.081 kb on + strand, within ECD_00415at 455.084 kb on + strand, within ECD_00415at 455.084 kb on + strand, within ECD_00415at 455.142 kb on + strand, within ECD_00415at 455.142 kb on + strand, within ECD_00415at 455.142 kb on + strand, within ECD_00415at 455.199 kb on + strand, within ECD_00415at 455.200 kb on - strand, within ECD_00415at 455.250 kb on + strand, within ECD_00415at 455.316 kb on + strand, within ECD_00415at 455.410 kb on + strandat 455.411 kb on - strandat 455.588 kb on - strandat 455.588 kb on - strandat 455.600 kb on + strandat 455.635 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
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452,627 - ECD_00413 0.74 -0.3
452,748 - ECD_00413 0.78 +0.1
452,905 + ECD_00413 0.83 +1.0
452,981 - ECD_00413 0.85 +0.1
453,159 - -1.8
453,221 - +0.4
453,221 - -0.3
453,221 - -0.4
453,221 - +0.5
453,221 - +0.9
453,221 - +0.0
453,221 - -0.6
453,221 - +0.9
453,246 - +0.4
453,342 - +1.0
453,455 - -0.1
453,468 + -1.9
453,474 - +0.2
453,474 - +0.7
453,584 - +0.8
453,584 - +0.3
453,584 - -0.4
453,584 - +0.2
453,584 - +0.1
453,692 - ECD_00414 0.18 +0.1
453,847 - ECD_00414 0.31 -0.1
454,028 + ECD_00414 0.47 -0.8
454,028 + ECD_00414 0.47 +0.0
454,029 - ECD_00414 0.47 -0.5
454,082 - ECD_00414 0.51 +0.4
454,082 - ECD_00414 0.51 +1.3
454,111 - ECD_00414 0.54 +1.0
454,111 - ECD_00414 0.54 +1.2
454,148 + ECD_00414 0.57 -1.6
454,239 - ECD_00414 0.64 +0.5
454,239 - ECD_00414 0.64 +0.1
454,239 - ECD_00414 0.64 -0.3
454,256 + ECD_00414 0.66 -2.0
454,352 + ECD_00414 0.74 -1.3
454,353 - ECD_00414 0.74 +0.4
454,353 - ECD_00414 0.74 +1.4
454,353 - ECD_00414 0.74 -0.2
454,365 - ECD_00414 0.75 +0.2
454,365 - ECD_00414 0.75 +0.6
454,538 - ECD_00414 0.89 -0.2
454,538 - ECD_00414 0.89 -0.0
454,541 - ECD_00414 0.90 +1.6
454,669 + -2.4
454,670 - -1.1
454,670 - -1.0
454,670 - -0.2
454,713 + -0.6
454,714 - +1.0
454,734 + -1.3
454,735 - +0.5
454,735 - +0.5
454,736 + -1.9
454,737 - +0.5
454,759 + -0.3
454,759 + +0.6
454,792 + -0.6
454,806 + -0.4
454,807 - +0.6
455,024 + ECD_00415 0.33 +0.0
455,081 + ECD_00415 0.42 +0.3
455,084 + ECD_00415 0.43 +0.0
455,084 + ECD_00415 0.43 +0.2
455,142 + ECD_00415 0.52 +0.2
455,142 + ECD_00415 0.52 +0.5
455,142 + ECD_00415 0.52 +2.0
455,199 + ECD_00415 0.60 +0.3
455,200 - ECD_00415 0.61 -2.7
455,250 + ECD_00415 0.68 +0.8
455,316 + ECD_00415 0.79 +0.4
455,410 + -0.2
455,411 - -2.0
455,588 - -2.0
455,588 - -2.2
455,600 + -0.0
455,635 + -0.1

Or see this region's nucleotide sequence