Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00292 and ECD_00293 are separated by 108 nucleotides ECD_00293 and ECD_00294 are separated by 30 nucleotides ECD_00294 and ECD_00295 are separated by 32 nucleotides
ECD_00292: ECD_00292 - transcriptional activator of cyn operon; autorepressor, at 327,326 to 328,225
_00292
ECD_00293: ECD_00293 - carbonic anhydrase, at 328,334 to 328,993
_00293
ECD_00294: ECD_00294 - cyanate aminohydrolase, at 329,024 to 329,494
_00294
ECD_00295: ECD_00295 - putative cyanate transporter, at 329,527 to 330,681
_00295
Position (kb) 329
330 Strain fitness (log2 ratio) -2
-1
0
1
2 at 328.027 kb on - strand, within ECD_00292 at 328.097 kb on + strand, within ECD_00292 at 328.110 kb on - strand, within ECD_00292 at 328.295 kb on + strand at 328.295 kb on + strand at 328.295 kb on + strand at 328.345 kb on + strand at 328.346 kb on - strand at 328.361 kb on - strand at 328.402 kb on + strand, within ECD_00293 at 328.581 kb on - strand, within ECD_00293 at 328.678 kb on + strand, within ECD_00293 at 328.678 kb on + strand, within ECD_00293 at 328.679 kb on - strand, within ECD_00293 at 328.780 kb on - strand, within ECD_00293 at 328.807 kb on + strand, within ECD_00293 at 328.878 kb on - strand, within ECD_00293 at 328.998 kb on - strand at 329.241 kb on + strand, within ECD_00294 at 329.242 kb on - strand, within ECD_00294 at 329.306 kb on + strand, within ECD_00294 at 329.307 kb on - strand, within ECD_00294 at 329.333 kb on + strand, within ECD_00294 at 329.339 kb on - strand, within ECD_00294 at 329.383 kb on + strand, within ECD_00294 at 329.384 kb on - strand, within ECD_00294 at 329.414 kb on - strand, within ECD_00294 at 329.460 kb on + strand at 329.460 kb on + strand at 329.460 kb on + strand at 329.461 kb on - strand at 329.461 kb on - strand at 329.467 kb on + strand at 329.537 kb on + strand at 329.556 kb on + strand at 329.560 kb on - strand at 329.560 kb on - strand at 329.628 kb on + strand at 330.104 kb on + strand, within ECD_00295 at 330.136 kb on + strand, within ECD_00295 at 330.193 kb on + strand, within ECD_00295 at 330.194 kb on - strand, within ECD_00295 at 330.194 kb on - strand, within ECD_00295 at 330.194 kb on - strand, within ECD_00295 at 330.234 kb on - strand, within ECD_00295 at 330.285 kb on + strand, within ECD_00295 at 330.286 kb on - strand, within ECD_00295 at 330.318 kb on - strand, within ECD_00295 at 330.336 kb on - strand, within ECD_00295 at 330.336 kb on - strand, within ECD_00295 at 330.336 kb on - strand, within ECD_00295
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10 remove 328,027 - ECD_00292 0.78 -0.0 328,097 + ECD_00292 0.86 -0.7 328,110 - ECD_00292 0.87 +0.6 328,295 + -0.2 328,295 + +0.6 328,295 + -0.1 328,345 + -0.4 328,346 - +0.6 328,361 - -1.1 328,402 + ECD_00293 0.10 -1.5 328,581 - ECD_00293 0.37 -0.8 328,678 + ECD_00293 0.52 +0.1 328,678 + ECD_00293 0.52 -1.3 328,679 - ECD_00293 0.52 -1.5 328,780 - ECD_00293 0.68 +0.3 328,807 + ECD_00293 0.72 -0.3 328,878 - ECD_00293 0.82 -1.0 328,998 - -0.2 329,241 + ECD_00294 0.46 -0.5 329,242 - ECD_00294 0.46 -0.1 329,306 + ECD_00294 0.60 +0.2 329,307 - ECD_00294 0.60 +0.3 329,333 + ECD_00294 0.66 +0.0 329,339 - ECD_00294 0.67 +0.5 329,383 + ECD_00294 0.76 -0.1 329,384 - ECD_00294 0.76 +0.1 329,414 - ECD_00294 0.83 -0.7 329,460 + -0.2 329,460 + +0.1 329,460 + +1.8 329,461 - -1.3 329,461 - -2.2 329,467 + -0.2 329,537 + +0.2 329,556 + -0.1 329,560 - -0.0 329,560 - -1.0 329,628 + +0.3 330,104 + ECD_00295 0.50 +0.8 330,136 + ECD_00295 0.53 +0.5 330,193 + ECD_00295 0.58 +0.2 330,194 - ECD_00295 0.58 -1.5 330,194 - ECD_00295 0.58 -1.1 330,194 - ECD_00295 0.58 +0.0 330,234 - ECD_00295 0.61 +0.9 330,285 + ECD_00295 0.66 +0.3 330,286 - ECD_00295 0.66 -0.2 330,318 - ECD_00295 0.68 -0.6 330,336 - ECD_00295 0.70 -0.1 330,336 - ECD_00295 0.70 -1.4 330,336 - ECD_00295 0.70 -1.7
Or see this region's nucleotide sequence