Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00066 and ECD_00067 are separated by 85 nucleotides ECD_00067 and ECD_00068 are separated by 113 nucleotides ECD_00068 and ECD_00069 overlap by 17 nucleotides
ECD_00066: ECD_00066 - ara regulon transcriptional activator; autorepressor, at 73,192 to 74,070
_00066
ECD_00067: ECD_00067 - DedA family inner membrane protein, at 74,156 to 74,920
_00067
ECD_00068: ECD_00068 - thiamine/thiamine pyrophosphate ABC transporter ATPase, at 75,034 to 75,732
_00068
ECD_00069: ECD_00069 - thiamine/thiamine pyrophosphate ABC transporter permease, at 75,716 to 77,326
_00069
Position (kb) 74
75 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 73.324 kb on + strand, within ECD_00066 at 73.324 kb on + strand, within ECD_00066 at 73.326 kb on + strand, within ECD_00066 at 73.326 kb on + strand, within ECD_00066 at 73.326 kb on + strand, within ECD_00066 at 73.326 kb on + strand, within ECD_00066 at 73.401 kb on + strand, within ECD_00066 at 73.402 kb on - strand, within ECD_00066 at 73.480 kb on + strand, within ECD_00066 at 73.480 kb on + strand, within ECD_00066 at 73.529 kb on + strand, within ECD_00066 at 73.744 kb on + strand, within ECD_00066 at 73.744 kb on + strand, within ECD_00066 at 73.854 kb on + strand, within ECD_00066 at 73.862 kb on + strand, within ECD_00066 at 73.863 kb on - strand, within ECD_00066 at 73.884 kb on + strand, within ECD_00066 at 73.884 kb on + strand, within ECD_00066 at 73.884 kb on + strand, within ECD_00066 at 73.884 kb on + strand, within ECD_00066 at 73.884 kb on + strand, within ECD_00066 at 73.885 kb on - strand, within ECD_00066 at 73.970 kb on - strand, within ECD_00066 at 73.983 kb on - strand at 74.051 kb on + strand at 74.052 kb on - strand at 74.108 kb on - strand at 74.108 kb on - strand at 74.112 kb on + strand at 74.112 kb on + strand at 74.180 kb on - strand at 74.183 kb on - strand at 74.198 kb on + strand at 74.199 kb on - strand at 74.262 kb on + strand, within ECD_00067 at 74.579 kb on - strand, within ECD_00067 at 74.587 kb on + strand, within ECD_00067 at 74.786 kb on + strand, within ECD_00067 at 74.787 kb on - strand, within ECD_00067 at 74.787 kb on - strand, within ECD_00067 at 74.885 kb on + strand at 74.885 kb on + strand at 74.885 kb on + strand at 74.885 kb on + strand at 74.885 kb on + strand at 74.885 kb on + strand at 74.885 kb on + strand at 74.886 kb on - strand at 74.894 kb on - strand at 74.967 kb on - strand at 74.967 kb on - strand at 75.032 kb on + strand at 75.032 kb on + strand at 75.032 kb on + strand at 75.033 kb on - strand at 75.033 kb on - strand at 75.033 kb on - strand at 75.036 kb on - strand at 75.372 kb on + strand, within ECD_00068 at 75.714 kb on + strand at 75.714 kb on + strand at 75.841 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_10 remove 73,324 + ECD_00066 0.15 +0.5 73,324 + ECD_00066 0.15 +0.8 73,326 + ECD_00066 0.15 +0.7 73,326 + ECD_00066 0.15 -0.3 73,326 + ECD_00066 0.15 +0.3 73,326 + ECD_00066 0.15 +0.9 73,401 + ECD_00066 0.24 +0.2 73,402 - ECD_00066 0.24 -0.5 73,480 + ECD_00066 0.33 +0.4 73,480 + ECD_00066 0.33 +0.6 73,529 + ECD_00066 0.38 +0.2 73,744 + ECD_00066 0.63 +0.6 73,744 + ECD_00066 0.63 -1.1 73,854 + ECD_00066 0.75 -0.6 73,862 + ECD_00066 0.76 +0.0 73,863 - ECD_00066 0.76 -1.2 73,884 + ECD_00066 0.79 +1.8 73,884 + ECD_00066 0.79 -0.9 73,884 + ECD_00066 0.79 +0.8 73,884 + ECD_00066 0.79 +0.5 73,884 + ECD_00066 0.79 +0.5 73,885 - ECD_00066 0.79 -1.1 73,970 - ECD_00066 0.89 +0.4 73,983 - -2.2 74,051 + -0.4 74,052 - -3.0 74,108 - -0.2 74,108 - -0.5 74,112 + +0.2 74,112 + +0.1 74,180 - -1.1 74,183 - -0.6 74,198 + +0.3 74,199 - +0.2 74,262 + ECD_00067 0.14 +0.6 74,579 - ECD_00067 0.55 +0.1 74,587 + ECD_00067 0.56 -0.2 74,786 + ECD_00067 0.82 +1.0 74,787 - ECD_00067 0.82 -1.5 74,787 - ECD_00067 0.82 -0.7 74,885 + +0.7 74,885 + +0.5 74,885 + +0.2 74,885 + -0.1 74,885 + +0.6 74,885 + -0.2 74,885 + +0.2 74,886 - -0.5 74,894 - -0.7 74,967 - -1.4 74,967 - -0.3 75,032 + -0.3 75,032 + -2.0 75,032 + -1.0 75,033 - -0.3 75,033 - -0.5 75,033 - +0.0 75,036 - -0.0 75,372 + ECD_00068 0.48 -0.5 75,714 + -1.0 75,714 + -1.3 75,841 - -0.2
Or see this region's nucleotide sequence