Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF971 and GFF972 are separated by 10 nucleotides GFF972 and GFF973 are separated by 488 nucleotides GFF973 and GFF974 are separated by 251 nucleotides
GFF971 - 3-demethylubiquinone-9 3-methyltransferase (EC 2.1.1.64), at 157,293 to 158,918
GFF971
GFF972 - FIG01045803: hypothetical protein, at 158,929 to 159,186
GFF972
GFF973 - FIG074102: hypothetical protein, at 159,675 to 160,283
GFF973
GFF974 - FIG01045697: hypothetical protein, at 160,535 to 161,530
GFF974
Position (kb) 159
160
161 Strain fitness (log2 ratio) -1
0
1
2 at 158.912 kb on + strand at 158.973 kb on + strand, within GFF972 at 158.973 kb on + strand, within GFF972 at 159.079 kb on - strand, within GFF972 at 159.080 kb on + strand, within GFF972 at 159.154 kb on + strand, within GFF972 at 159.155 kb on - strand, within GFF972 at 159.159 kb on + strand, within GFF972 at 159.159 kb on + strand, within GFF972 at 159.160 kb on - strand, within GFF972 at 159.160 kb on - strand, within GFF972 at 159.211 kb on + strand at 159.217 kb on - strand at 159.355 kb on + strand at 159.455 kb on + strand at 159.455 kb on + strand at 159.468 kb on + strand at 159.495 kb on + strand at 159.496 kb on - strand at 159.611 kb on + strand at 159.745 kb on + strand, within GFF973 at 160.058 kb on + strand, within GFF973 at 160.248 kb on + strand at 160.308 kb on - strand at 160.353 kb on - strand at 160.505 kb on + strand at 160.545 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 158,912 + -0.3 158,973 + GFF972 0.17 -0.1 158,973 + GFF972 0.17 +0.4 159,079 - GFF972 0.58 +0.1 159,080 + GFF972 0.59 +0.5 159,154 + GFF972 0.87 -0.3 159,155 - GFF972 0.88 +0.0 159,159 + GFF972 0.89 +0.4 159,159 + GFF972 0.89 +0.0 159,160 - GFF972 0.90 -0.2 159,160 - GFF972 0.90 +0.1 159,211 + +0.4 159,217 - +0.6 159,355 + +0.8 159,455 + +0.4 159,455 + +0.3 159,468 + -0.5 159,495 + +1.2 159,496 - -0.0 159,611 + +0.1 159,745 + GFF973 0.11 +0.5 160,058 + GFF973 0.63 +0.6 160,248 + -0.3 160,308 - +0.1 160,353 - +2.4 160,505 + +0.5 160,545 - -0.1
Or see this region's nucleotide sequence