Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4607 and GFF4608 are separated by 68 nucleotides GFF4608 and GFF4609 are separated by 8 nucleotides
GFF4607 - Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-), at 397,557 to 400,169
GFF4607
GFF4608 - Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1), at 400,238 to 400,822
GFF4608
GFF4609 - Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1), at 400,831 to 402,879
GFF4609
Position (kb) 400
401 Strain fitness (log2 ratio) -1
0
1 at 399.361 kb on - strand, within GFF4607 at 399.465 kb on - strand, within GFF4607 at 399.504 kb on + strand, within GFF4607 at 399.652 kb on + strand, within GFF4607 at 399.659 kb on + strand, within GFF4607 at 399.659 kb on + strand, within GFF4607 at 399.660 kb on - strand, within GFF4607 at 399.709 kb on - strand, within GFF4607 at 400.337 kb on - strand, within GFF4608 at 400.337 kb on - strand, within GFF4608 at 400.338 kb on + strand, within GFF4608 at 400.339 kb on - strand, within GFF4608 at 400.432 kb on + strand, within GFF4608 at 400.433 kb on - strand, within GFF4608 at 400.530 kb on - strand, within GFF4608 at 400.592 kb on - strand, within GFF4608 at 400.594 kb on - strand, within GFF4608 at 400.677 kb on - strand, within GFF4608 at 400.690 kb on + strand, within GFF4608 at 400.788 kb on - strand at 400.788 kb on - strand at 400.812 kb on - strand at 400.825 kb on + strand at 400.826 kb on - strand at 400.882 kb on - strand at 401.238 kb on + strand, within GFF4609
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 399,361 - GFF4607 0.69 +0.0 399,465 - GFF4607 0.73 -0.1 399,504 + GFF4607 0.75 -0.1 399,652 + GFF4607 0.80 -0.2 399,659 + GFF4607 0.80 -0.1 399,659 + GFF4607 0.80 -0.0 399,660 - GFF4607 0.80 +1.2 399,709 - GFF4607 0.82 +0.7 400,337 - GFF4608 0.17 +0.1 400,337 - GFF4608 0.17 +0.0 400,338 + GFF4608 0.17 +0.4 400,339 - GFF4608 0.17 -0.3 400,432 + GFF4608 0.33 +1.1 400,433 - GFF4608 0.33 +0.5 400,530 - GFF4608 0.50 +0.5 400,592 - GFF4608 0.61 +0.1 400,594 - GFF4608 0.61 +0.1 400,677 - GFF4608 0.75 -0.4 400,690 + GFF4608 0.77 +0.1 400,788 - +0.1 400,788 - +0.0 400,812 - +0.0 400,825 + -0.9 400,826 - +0.4 400,882 - +0.0 401,238 + GFF4609 0.20 +1.0
Or see this region's nucleotide sequence