Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4452 and GFF4453 are separated by 9 nucleotides GFF4453 and GFF4454 are separated by 45 nucleotides
GFF4452 - Fimbriae-like adhesin SfmH, at 238,889 to 239,896
GFF4452
GFF4453 - Fimbriae-like periplasmic protein SfmF, at 239,906 to 240,424
GFF4453
GFF4454 - Transcriptional regulator of fimbriae expression FimZ (LuxR/UhpA family), at 240,470 to 241,102
GFF4454
Position (kb) 239
240
241 Strain fitness (log2 ratio) -1
0
1 at 239.133 kb on - strand, within GFF4452 at 239.133 kb on - strand, within GFF4452 at 239.136 kb on + strand, within GFF4452 at 239.177 kb on + strand, within GFF4452 at 239.195 kb on + strand, within GFF4452 at 239.239 kb on - strand, within GFF4452 at 239.258 kb on + strand, within GFF4452 at 239.281 kb on + strand, within GFF4452 at 239.362 kb on + strand, within GFF4452 at 239.399 kb on + strand, within GFF4452 at 239.400 kb on - strand, within GFF4452 at 239.440 kb on - strand, within GFF4452 at 239.441 kb on + strand, within GFF4452 at 239.450 kb on - strand, within GFF4452 at 239.541 kb on + strand, within GFF4452 at 239.605 kb on + strand, within GFF4452 at 239.614 kb on + strand, within GFF4452 at 239.720 kb on - strand, within GFF4452 at 239.722 kb on + strand, within GFF4452 at 239.806 kb on + strand at 240.167 kb on - strand, within GFF4453 at 240.167 kb on - strand, within GFF4453 at 240.351 kb on - strand, within GFF4453 at 240.353 kb on - strand, within GFF4453 at 240.422 kb on + strand at 240.423 kb on - strand at 240.471 kb on + strand at 240.539 kb on + strand, within GFF4454 at 241.063 kb on + strand at 241.108 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 239,133 - GFF4452 0.24 +0.1 239,133 - GFF4452 0.24 -0.4 239,136 + GFF4452 0.25 -0.4 239,177 + GFF4452 0.29 +0.2 239,195 + GFF4452 0.30 -0.1 239,239 - GFF4452 0.35 -0.0 239,258 + GFF4452 0.37 -0.2 239,281 + GFF4452 0.39 -0.9 239,362 + GFF4452 0.47 -0.4 239,399 + GFF4452 0.51 -0.2 239,400 - GFF4452 0.51 -0.4 239,440 - GFF4452 0.55 -0.4 239,441 + GFF4452 0.55 -0.3 239,450 - GFF4452 0.56 -0.3 239,541 + GFF4452 0.65 -0.7 239,605 + GFF4452 0.71 -0.4 239,614 + GFF4452 0.72 -0.1 239,720 - GFF4452 0.82 -0.5 239,722 + GFF4452 0.83 +0.3 239,806 + -0.6 240,167 - GFF4453 0.50 -0.4 240,167 - GFF4453 0.50 +0.8 240,351 - GFF4453 0.86 +1.0 240,353 - GFF4453 0.86 -0.3 240,422 + +0.2 240,423 - -0.4 240,471 + -0.5 240,539 + GFF4454 0.11 -0.1 241,063 + -0.1 241,108 + -0.1
Or see this region's nucleotide sequence