Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4105

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4104 and GFF4105 are separated by 218 nucleotidesGFF4105 and GFF4106 overlap by 4 nucleotidesGFF4106 and GFF4107 overlap by 4 nucleotidesGFF4107 and GFF4108 are separated by 155 nucleotides GFF4104 - DNA polymerase IV (EC 2.7.7.7), at 63,210 to 64,265 GFF4104 GFF4105 - Protein with similarity to RtcB, at 64,484 to 65,458 GFF4105 GFF4106 - Protein with similarity to RtcB, at 65,455 to 65,616 GFF4106 GFF4107 - Peptide chain release factor homolog, at 65,613 to 66,227 GFF4107 GFF4108 - Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3), at 66,383 to 67,840 GFF4108 Position (kb) 64 65 66Strain fitness (log2 ratio) -2 -1 0 1at 63.694 kb on - strand, within GFF4104at 63.912 kb on - strand, within GFF4104at 64.291 kb on - strandat 64.572 kb on + strandat 64.576 kb on + strandat 64.576 kb on + strandat 64.751 kb on - strand, within GFF4105at 65.219 kb on - strand, within GFF4105at 65.251 kb on + strand, within GFF4105at 65.311 kb on + strand, within GFF4105at 65.312 kb on - strand, within GFF4105at 65.482 kb on + strand, within GFF4106at 65.483 kb on - strand, within GFF4106at 65.503 kb on + strand, within GFF4106at 65.503 kb on + strand, within GFF4106at 65.506 kb on - strand, within GFF4106at 65.717 kb on - strand, within GFF4107at 65.753 kb on - strand, within GFF4107at 65.753 kb on - strand, within GFF4107at 65.923 kb on + strand, within GFF4107at 65.987 kb on + strand, within GFF4107at 65.988 kb on - strand, within GFF4107at 66.201 kb on - strandat 66.249 kb on - strandat 66.286 kb on + strandat 66.310 kb on + strandat 66.452 kb on + strandat 66.452 kb on + strandat 66.452 kb on + strandat 66.453 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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63,694 - GFF4104 0.46 +0.4
63,912 - GFF4104 0.66 -0.0
64,291 - -0.5
64,572 + -0.7
64,576 + +0.5
64,576 + +0.3
64,751 - GFF4105 0.27 +0.9
65,219 - GFF4105 0.75 +0.1
65,251 + GFF4105 0.79 +0.8
65,311 + GFF4105 0.85 +0.7
65,312 - GFF4105 0.85 -0.0
65,482 + GFF4106 0.17 -0.2
65,483 - GFF4106 0.17 +0.6
65,503 + GFF4106 0.30 +0.5
65,503 + GFF4106 0.30 +0.6
65,506 - GFF4106 0.31 +0.3
65,717 - GFF4107 0.17 -0.2
65,753 - GFF4107 0.23 +0.3
65,753 - GFF4107 0.23 +0.5
65,923 + GFF4107 0.50 -1.8
65,987 + GFF4107 0.61 +0.2
65,988 - GFF4107 0.61 +0.9
66,201 - -0.1
66,249 - +0.2
66,286 + +0.8
66,310 + +0.2
66,452 + -0.2
66,452 + -0.3
66,452 + -0.0
66,453 - +0.2

Or see this region's nucleotide sequence