Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3603

Experiment: LB_plus_SM_buffer

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3602 and GFF3603 are separated by 57 nucleotidesGFF3603 and GFF3604 overlap by 16 nucleotides GFF3602 - Type III secretion cytoplasmic protein (YscL), at 354,306 to 355,298 GFF3602 GFF3603 - Secretion system apparatus protein SsaM, at 355,356 to 355,724 GFF3603 GFF3604 - Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV), at 355,709 to 357,754 GFF3604 Position (kb) 355 356Strain fitness (log2 ratio) -2 -1 0 1at 354.387 kb on - strandat 354.403 kb on + strandat 354.644 kb on + strand, within GFF3602at 354.792 kb on - strand, within GFF3602at 354.850 kb on + strand, within GFF3602at 354.906 kb on - strand, within GFF3602at 354.986 kb on - strand, within GFF3602at 355.203 kb on - strandat 355.471 kb on - strand, within GFF3603at 355.669 kb on + strand, within GFF3603at 355.778 kb on - strandat 355.962 kb on + strand, within GFF3604at 356.056 kb on - strand, within GFF3604at 356.086 kb on - strand, within GFF3604at 356.386 kb on - strand, within GFF3604at 356.425 kb on + strand, within GFF3604at 356.498 kb on - strand, within GFF3604at 356.586 kb on + strand, within GFF3604

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
remove
354,387 - -1.3
354,403 + +0.7
354,644 + GFF3602 0.34 +0.1
354,792 - GFF3602 0.49 +0.3
354,850 + GFF3602 0.55 -0.6
354,906 - GFF3602 0.60 -0.5
354,986 - GFF3602 0.68 +0.1
355,203 - +0.3
355,471 - GFF3603 0.31 -0.4
355,669 + GFF3603 0.85 -2.1
355,778 - -0.2
355,962 + GFF3604 0.12 +0.3
356,056 - GFF3604 0.17 -0.7
356,086 - GFF3604 0.18 -0.4
356,386 - GFF3604 0.33 -0.6
356,425 + GFF3604 0.35 +0.3
356,498 - GFF3604 0.39 +1.0
356,586 + GFF3604 0.43 +0.7

Or see this region's nucleotide sequence