Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3077 and GFF3078 are separated by 68 nucleotides GFF3078 and GFF3079 are separated by 448 nucleotides
GFF3077 - Arylsulfatase (EC 3.1.6.1), at 85,721 to 87,460
GFF3077
GFF3078 - Putative arylsulfatase regulator, at 87,529 to 88,713
GFF3078
GFF3079 - Putative response regulator, at 89,162 to 89,908
GFF3079
Position (kb) 87
88
89 Strain fitness (log2 ratio) -1
0
1 at 86.570 kb on - strand, within GFF3077 at 86.570 kb on - strand, within GFF3077 at 86.602 kb on - strand, within GFF3077 at 86.739 kb on + strand, within GFF3077 at 86.821 kb on + strand, within GFF3077 at 86.927 kb on - strand, within GFF3077 at 86.927 kb on - strand, within GFF3077 at 86.928 kb on + strand, within GFF3077 at 86.928 kb on + strand, within GFF3077 at 86.929 kb on - strand, within GFF3077 at 86.931 kb on + strand, within GFF3077 at 86.931 kb on + strand, within GFF3077 at 86.931 kb on + strand, within GFF3077 at 86.931 kb on + strand, within GFF3077 at 86.932 kb on - strand, within GFF3077 at 86.932 kb on - strand, within GFF3077 at 86.935 kb on + strand, within GFF3077 at 86.943 kb on - strand, within GFF3077 at 87.100 kb on + strand, within GFF3077 at 87.101 kb on - strand, within GFF3077 at 87.162 kb on - strand, within GFF3077 at 87.261 kb on + strand, within GFF3077 at 87.379 kb on + strand at 87.379 kb on + strand at 87.447 kb on - strand at 87.466 kb on - strand at 87.482 kb on + strand at 87.643 kb on - strand at 87.673 kb on - strand, within GFF3078 at 87.673 kb on - strand, within GFF3078 at 87.701 kb on - strand, within GFF3078 at 87.745 kb on - strand, within GFF3078 at 87.792 kb on + strand, within GFF3078 at 87.799 kb on - strand, within GFF3078 at 87.816 kb on - strand, within GFF3078 at 87.828 kb on + strand, within GFF3078 at 87.829 kb on - strand, within GFF3078 at 88.005 kb on + strand, within GFF3078 at 88.175 kb on - strand, within GFF3078 at 88.202 kb on - strand, within GFF3078 at 88.421 kb on - strand, within GFF3078 at 88.424 kb on - strand, within GFF3078 at 88.814 kb on - strand at 88.818 kb on - strand at 88.865 kb on - strand at 88.869 kb on - strand at 89.111 kb on + strand at 89.124 kb on + strand at 89.180 kb on - strand at 89.278 kb on - strand, within GFF3079 at 89.480 kb on - strand, within GFF3079 at 89.515 kb on + strand, within GFF3079 at 89.524 kb on + strand, within GFF3079 at 89.573 kb on - strand, within GFF3079 at 89.573 kb on - strand, within GFF3079 at 89.605 kb on - strand, within GFF3079 at 89.643 kb on + strand, within GFF3079
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 86,570 - GFF3077 0.49 -0.1 86,570 - GFF3077 0.49 -0.0 86,602 - GFF3077 0.51 -1.3 86,739 + GFF3077 0.59 +0.1 86,821 + GFF3077 0.63 +0.2 86,927 - GFF3077 0.69 -0.6 86,927 - GFF3077 0.69 +0.2 86,928 + GFF3077 0.69 +0.0 86,928 + GFF3077 0.69 -0.4 86,929 - GFF3077 0.69 +0.8 86,931 + GFF3077 0.70 -0.4 86,931 + GFF3077 0.70 -1.5 86,931 + GFF3077 0.70 +0.4 86,931 + GFF3077 0.70 -0.1 86,932 - GFF3077 0.70 -0.7 86,932 - GFF3077 0.70 -0.1 86,935 + GFF3077 0.70 +0.2 86,943 - GFF3077 0.70 +0.2 87,100 + GFF3077 0.79 -0.5 87,101 - GFF3077 0.79 +0.1 87,162 - GFF3077 0.83 -0.2 87,261 + GFF3077 0.89 -0.0 87,379 + -1.6 87,379 + -0.5 87,447 - -0.1 87,466 - +0.2 87,482 + -0.1 87,643 - -0.7 87,673 - GFF3078 0.12 -0.5 87,673 - GFF3078 0.12 -0.0 87,701 - GFF3078 0.15 +0.5 87,745 - GFF3078 0.18 -0.8 87,792 + GFF3078 0.22 -0.2 87,799 - GFF3078 0.23 +0.4 87,816 - GFF3078 0.24 -0.1 87,828 + GFF3078 0.25 +0.2 87,829 - GFF3078 0.25 +0.0 88,005 + GFF3078 0.40 -0.0 88,175 - GFF3078 0.55 +0.0 88,202 - GFF3078 0.57 +0.4 88,421 - GFF3078 0.75 -0.2 88,424 - GFF3078 0.76 +0.2 88,814 - +0.2 88,818 - +0.1 88,865 - +0.7 88,869 - -0.2 89,111 + -0.2 89,124 + -0.7 89,180 - +0.3 89,278 - GFF3079 0.16 +0.0 89,480 - GFF3079 0.43 -0.4 89,515 + GFF3079 0.47 -0.4 89,524 + GFF3079 0.48 +0.0 89,573 - GFF3079 0.55 -0.7 89,573 - GFF3079 0.55 +0.0 89,605 - GFF3079 0.59 -0.7 89,643 + GFF3079 0.64 -0.2
Or see this region's nucleotide sequence