Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2507

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2504 and GFF2505 are separated by 118 nucleotidesGFF2505 and GFF2506 are separated by 28 nucleotidesGFF2506 and GFF2507 are separated by 19 nucleotidesGFF2507 and GFF2508 are separated by 315 nucleotides GFF2504 - Permease of the drug/metabolite transporter (DMT) superfamily, at 21,446 to 22,348 GFF2504 GFF2505 - Multiple antibiotic resistance protein MarB, at 22,467 to 22,682 GFF2505 GFF2506 - Multiple antibiotic resistance protein MarA, at 22,711 to 23,094 GFF2506 GFF2507 - Multiple antibiotic resistance protein MarR, at 23,114 to 23,491 GFF2507 GFF2508 - Multiple antibiotic resistance protein MarC, at 23,807 to 24,472 GFF2508 Position (kb) 23 24Strain fitness (log2 ratio) -2 -1 0 1at 22.296 kb on - strandat 22.297 kb on + strandat 22.327 kb on + strandat 22.355 kb on - strandat 22.362 kb on + strandat 22.560 kb on + strand, within GFF2505at 22.712 kb on + strandat 22.713 kb on - strandat 22.715 kb on + strandat 22.741 kb on - strandat 22.741 kb on - strandat 22.762 kb on - strand, within GFF2506at 22.844 kb on + strand, within GFF2506at 22.845 kb on - strand, within GFF2506at 22.925 kb on + strand, within GFF2506at 23.064 kb on + strandat 23.064 kb on + strandat 23.065 kb on - strandat 23.065 kb on - strandat 23.065 kb on - strandat 23.071 kb on - strandat 23.116 kb on - strandat 23.116 kb on - strandat 23.139 kb on + strandat 23.180 kb on + strand, within GFF2507at 23.387 kb on - strand, within GFF2507at 23.387 kb on - strand, within GFF2507at 23.387 kb on - strand, within GFF2507at 23.387 kb on - strand, within GFF2507at 23.659 kb on - strandat 23.793 kb on + strandat 23.800 kb on + strandat 23.803 kb on + strandat 23.803 kb on + strandat 23.806 kb on + strandat 23.940 kb on - strand, within GFF2508at 23.942 kb on - strand, within GFF2508at 23.969 kb on - strand, within GFF2508at 24.181 kb on + strand, within GFF2508at 24.349 kb on + strand, within GFF2508at 24.470 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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22,296 - +0.9
22,297 + -0.2
22,327 + +0.6
22,355 - -2.7
22,362 + -0.1
22,560 + GFF2505 0.43 -0.8
22,712 + +0.4
22,713 - -0.0
22,715 + +0.5
22,741 - +0.5
22,741 - +0.7
22,762 - GFF2506 0.13 +0.2
22,844 + GFF2506 0.35 +0.3
22,845 - GFF2506 0.35 -0.4
22,925 + GFF2506 0.56 -0.4
23,064 + +0.2
23,064 + +0.4
23,065 - -0.0
23,065 - -0.2
23,065 - +0.1
23,071 - -0.3
23,116 - -0.1
23,116 - +0.8
23,139 + -0.3
23,180 + GFF2507 0.17 -0.1
23,387 - GFF2507 0.72 +0.3
23,387 - GFF2507 0.72 +0.8
23,387 - GFF2507 0.72 +0.4
23,387 - GFF2507 0.72 +0.0
23,659 - +0.5
23,793 + -0.1
23,800 + +0.4
23,803 + +0.1
23,803 + -0.0
23,806 + +0.9
23,940 - GFF2508 0.20 -0.0
23,942 - GFF2508 0.20 -0.5
23,969 - GFF2508 0.24 -0.2
24,181 + GFF2508 0.56 +0.0
24,349 + GFF2508 0.81 +0.4
24,470 + +0.2

Or see this region's nucleotide sequence