Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2417

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2415 and GFF2416 are separated by 120 nucleotidesGFF2416 and GFF2417 overlap by 1 nucleotidesGFF2417 and GFF2418 overlap by 8 nucleotidesGFF2418 and GFF2419 overlap by 4 nucleotides GFF2415 - Nucleoside diphosphate kinase (EC 2.7.4.6), at 28,554 to 28,985 GFF2415 GFF2416 - Putative polyferredoxin, at 29,106 to 29,969 GFF2416 GFF2417 - Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.5.3), at 29,969 to 30,778 GFF2417 GFF2418 - Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.5.3), at 30,771 to 31,400 GFF2418 GFF2419 - Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-), at 31,397 to 33,775 GFF2419 Position (kb) 29 30 31Strain fitness (log2 ratio) -2 -1 0 1at 28.990 kb on - strandat 29.031 kb on + strandat 29.094 kb on + strandat 29.094 kb on + strandat 29.207 kb on + strand, within GFF2416at 29.208 kb on - strand, within GFF2416at 29.217 kb on - strand, within GFF2416at 29.220 kb on - strand, within GFF2416at 29.349 kb on - strand, within GFF2416at 29.649 kb on - strand, within GFF2416at 29.811 kb on + strand, within GFF2416at 29.812 kb on - strand, within GFF2416at 29.825 kb on + strand, within GFF2416at 29.977 kb on + strandat 29.980 kb on + strandat 29.981 kb on - strandat 29.981 kb on - strandat 29.991 kb on + strandat 30.001 kb on + strandat 30.117 kb on + strand, within GFF2417at 30.190 kb on + strand, within GFF2417at 30.358 kb on + strand, within GFF2417at 30.388 kb on + strand, within GFF2417at 30.389 kb on - strand, within GFF2417at 30.390 kb on + strand, within GFF2417at 30.390 kb on + strand, within GFF2417at 30.410 kb on + strand, within GFF2417at 30.510 kb on + strand, within GFF2417at 30.563 kb on + strand, within GFF2417at 30.563 kb on + strand, within GFF2417at 30.563 kb on + strand, within GFF2417at 30.693 kb on + strand, within GFF2417at 30.768 kb on - strandat 30.992 kb on + strand, within GFF2418at 31.055 kb on - strand, within GFF2418at 31.405 kb on + strandat 31.406 kb on - strandat 31.406 kb on - strandat 31.607 kb on - strandat 31.633 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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28,990 - +0.1
29,031 + -0.7
29,094 + -0.1
29,094 + -0.1
29,207 + GFF2416 0.12 +1.0
29,208 - GFF2416 0.12 +0.2
29,217 - GFF2416 0.13 +0.6
29,220 - GFF2416 0.13 -2.2
29,349 - GFF2416 0.28 +0.1
29,649 - GFF2416 0.63 +1.5
29,811 + GFF2416 0.82 +0.3
29,812 - GFF2416 0.82 +0.1
29,825 + GFF2416 0.83 +0.1
29,977 + +0.8
29,980 + -0.4
29,981 - -0.1
29,981 - -0.0
29,991 + -1.0
30,001 + +0.1
30,117 + GFF2417 0.18 +0.1
30,190 + GFF2417 0.27 +0.6
30,358 + GFF2417 0.48 +0.1
30,388 + GFF2417 0.52 +0.2
30,389 - GFF2417 0.52 +0.1
30,390 + GFF2417 0.52 -0.5
30,390 + GFF2417 0.52 +0.2
30,410 + GFF2417 0.54 -0.0
30,510 + GFF2417 0.67 -0.1
30,563 + GFF2417 0.73 +0.7
30,563 + GFF2417 0.73 +0.1
30,563 + GFF2417 0.73 +0.8
30,693 + GFF2417 0.89 +0.3
30,768 - -0.2
30,992 + GFF2418 0.35 -0.2
31,055 - GFF2418 0.45 -0.3
31,405 + -0.1
31,406 - +0.0
31,406 - -0.1
31,607 - +0.3
31,633 + +0.6

Or see this region's nucleotide sequence