Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2307 and GFF2308 are separated by 20 nucleotides GFF2308 and GFF2309 are separated by 398 nucleotides GFF2309 and GFF2310 are separated by 84 nucleotides GFF2310 and GFF2311 overlap by 4 nucleotides
GFF2307 - Glycerol kinase (EC 2.7.1.30), at 93,266 to 94,774
GFF2307
GFF2308 - Glycerol uptake facilitator protein, at 94,795 to 95,640
GFF2308
GFF2309 - FIG074102: hypothetical protein, at 96,039 to 96,278
GFF2309
GFF2310 - hypothetical protein, at 96,363 to 96,503
GFF2310
GFF2311 - Ribonuclease E inhibitor RraA, at 96,500 to 96,985
GFF2311
Position (kb) 94
95
96 Strain fitness (log2 ratio) -1
0
1
2 at 93.873 kb on + strand, within GFF2307 at 93.978 kb on + strand, within GFF2307 at 94.063 kb on + strand, within GFF2307 at 94.063 kb on + strand, within GFF2307 at 94.063 kb on + strand, within GFF2307 at 94.063 kb on + strand, within GFF2307 at 94.063 kb on + strand, within GFF2307 at 94.064 kb on - strand, within GFF2307 at 94.064 kb on - strand, within GFF2307 at 94.069 kb on + strand, within GFF2307 at 94.078 kb on + strand, within GFF2307 at 94.117 kb on + strand, within GFF2307 at 94.117 kb on + strand, within GFF2307 at 94.117 kb on + strand, within GFF2307 at 94.118 kb on - strand, within GFF2307 at 94.118 kb on - strand, within GFF2307 at 94.121 kb on + strand, within GFF2307 at 94.122 kb on - strand, within GFF2307 at 94.168 kb on + strand, within GFF2307 at 94.169 kb on - strand, within GFF2307 at 94.224 kb on + strand, within GFF2307 at 94.264 kb on + strand, within GFF2307 at 94.273 kb on + strand, within GFF2307 at 94.354 kb on + strand, within GFF2307 at 94.405 kb on - strand, within GFF2307 at 94.405 kb on - strand, within GFF2307 at 94.471 kb on + strand, within GFF2307 at 94.472 kb on - strand, within GFF2307 at 94.480 kb on - strand, within GFF2307 at 94.637 kb on + strand at 94.757 kb on - strand at 94.946 kb on + strand, within GFF2308 at 95.229 kb on - strand, within GFF2308 at 95.229 kb on - strand, within GFF2308 at 95.280 kb on + strand, within GFF2308 at 95.373 kb on + strand, within GFF2308 at 95.472 kb on - strand, within GFF2308 at 95.476 kb on - strand, within GFF2308 at 95.530 kb on - strand, within GFF2308 at 95.620 kb on + strand at 95.620 kb on + strand at 95.659 kb on - strand at 95.662 kb on + strand at 95.662 kb on + strand at 95.663 kb on - strand at 95.663 kb on - strand at 95.722 kb on + strand at 95.773 kb on + strand at 95.774 kb on - strand at 95.875 kb on + strand at 95.876 kb on - strand at 95.894 kb on + strand at 95.940 kb on - strand at 95.983 kb on - strand at 95.983 kb on - strand at 95.984 kb on + strand at 95.985 kb on - strand at 95.985 kb on - strand at 95.986 kb on + strand at 96.046 kb on + strand at 96.203 kb on + strand, within GFF2309 at 96.336 kb on + strand at 96.393 kb on + strand, within GFF2310 at 96.395 kb on + strand, within GFF2310 at 96.438 kb on - strand, within GFF2310
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 93,873 + GFF2307 0.40 +0.1 93,978 + GFF2307 0.47 -0.2 94,063 + GFF2307 0.53 +0.4 94,063 + GFF2307 0.53 +2.2 94,063 + GFF2307 0.53 +0.2 94,063 + GFF2307 0.53 +0.6 94,063 + GFF2307 0.53 +0.2 94,064 - GFF2307 0.53 -1.2 94,064 - GFF2307 0.53 +0.4 94,069 + GFF2307 0.53 +0.6 94,078 + GFF2307 0.54 +1.3 94,117 + GFF2307 0.56 +0.6 94,117 + GFF2307 0.56 +0.2 94,117 + GFF2307 0.56 +0.3 94,118 - GFF2307 0.56 +0.4 94,118 - GFF2307 0.56 +0.0 94,121 + GFF2307 0.57 +0.5 94,122 - GFF2307 0.57 +0.2 94,168 + GFF2307 0.60 +0.5 94,169 - GFF2307 0.60 +1.1 94,224 + GFF2307 0.63 +0.6 94,264 + GFF2307 0.66 -0.0 94,273 + GFF2307 0.67 +0.7 94,354 + GFF2307 0.72 +0.9 94,405 - GFF2307 0.75 +1.3 94,405 - GFF2307 0.75 -0.2 94,471 + GFF2307 0.80 -0.8 94,472 - GFF2307 0.80 -0.0 94,480 - GFF2307 0.80 -1.4 94,637 + +0.9 94,757 - +0.6 94,946 + GFF2308 0.18 +0.5 95,229 - GFF2308 0.51 +0.5 95,229 - GFF2308 0.51 +0.7 95,280 + GFF2308 0.57 +0.3 95,373 + GFF2308 0.68 +0.9 95,472 - GFF2308 0.80 +1.3 95,476 - GFF2308 0.80 +0.8 95,530 - GFF2308 0.87 +0.3 95,620 + +1.0 95,620 + +0.4 95,659 - +0.6 95,662 + +0.4 95,662 + +0.1 95,663 - +0.2 95,663 - -0.0 95,722 + +0.2 95,773 + +0.0 95,774 - +0.2 95,875 + -0.2 95,876 - +0.0 95,894 + +0.4 95,940 - +0.2 95,983 - +1.6 95,983 - +0.6 95,984 + +0.7 95,985 - -0.2 95,985 - +0.2 95,986 + +0.9 96,046 + -0.3 96,203 + GFF2309 0.68 +0.3 96,336 + -0.2 96,393 + GFF2310 0.21 +0.6 96,395 + GFF2310 0.23 +0.2 96,438 - GFF2310 0.53 +0.0
Or see this region's nucleotide sequence