Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2270

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2268 and GFF2269 are separated by 3 nucleotidesGFF2269 and GFF2270 are separated by 34 nucleotidesGFF2270 and GFF2271 are separated by 194 nucleotidesGFF2271 and GFF2272 are separated by 36 nucleotides GFF2268 - L-rhamnose-proton symporter, at 59,823 to 60,857 GFF2268 GFF2269 - hypothetical protein, at 60,861 to 60,992 GFF2269 GFF2270 - hypothetical protein, at 61,027 to 61,140 GFF2270 GFF2271 - hypothetical protein, at 61,335 to 61,451 GFF2271 GFF2272 - Oligogalacturonide-Rhamnogalacturonide-specific porin, at 61,488 to 62,159 GFF2272 Position (kb) 61 62Strain fitness (log2 ratio) -2 -1 0 1at 60.031 kb on + strand, within GFF2268at 60.226 kb on + strand, within GFF2268at 60.227 kb on - strand, within GFF2268at 60.227 kb on - strand, within GFF2268at 60.475 kb on - strand, within GFF2268at 60.475 kb on - strand, within GFF2268at 60.488 kb on + strand, within GFF2268at 60.501 kb on - strand, within GFF2268at 60.501 kb on - strand, within GFF2268at 60.531 kb on - strand, within GFF2268at 60.589 kb on + strand, within GFF2268at 60.594 kb on - strand, within GFF2268at 60.594 kb on - strand, within GFF2268at 60.594 kb on - strand, within GFF2268at 60.667 kb on + strand, within GFF2268at 60.790 kb on + strandat 60.938 kb on + strand, within GFF2269at 61.078 kb on + strand, within GFF2270at 61.602 kb on + strand, within GFF2272at 61.719 kb on - strand, within GFF2272at 61.736 kb on + strand, within GFF2272at 61.801 kb on - strand, within GFF2272at 61.801 kb on - strand, within GFF2272at 61.873 kb on - strand, within GFF2272at 61.920 kb on - strand, within GFF2272

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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60,031 + GFF2268 0.20 +0.5
60,226 + GFF2268 0.39 +0.4
60,227 - GFF2268 0.39 -0.1
60,227 - GFF2268 0.39 -0.8
60,475 - GFF2268 0.63 +0.6
60,475 - GFF2268 0.63 -0.7
60,488 + GFF2268 0.64 -0.1
60,501 - GFF2268 0.66 -0.2
60,501 - GFF2268 0.66 +0.7
60,531 - GFF2268 0.68 +0.2
60,589 + GFF2268 0.74 -0.1
60,594 - GFF2268 0.74 -0.2
60,594 - GFF2268 0.74 -0.4
60,594 - GFF2268 0.74 +0.2
60,667 + GFF2268 0.82 -2.4
60,790 + +0.1
60,938 + GFF2269 0.58 +0.1
61,078 + GFF2270 0.45 -0.4
61,602 + GFF2272 0.17 -0.3
61,719 - GFF2272 0.34 +0.1
61,736 + GFF2272 0.37 -0.0
61,801 - GFF2272 0.47 -0.2
61,801 - GFF2272 0.47 -0.2
61,873 - GFF2272 0.57 +0.0
61,920 - GFF2272 0.64 -0.0

Or see this region's nucleotide sequence