Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1817

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1817 and GFF1818 are separated by 9 nucleotidesGFF1818 and GFF1819 are separated by 115 nucleotides GFF1817 - Cytochrome c-type protein NapC, at 76 to 678 GFF1817 GFF1818 - Nitrate reductase cytochrome c550-type subunit, at 688 to 1,137 GFF1818 GFF1819 - Polyferredoxin NapH (periplasmic nitrate reductase), at 1,253 to 2,122 GFF1819 Position (kb) 0 1Strain fitness (log2 ratio) -1 0 1at 0.322 kb on - strand, within GFF1817at 0.467 kb on + strand, within GFF1817at 0.525 kb on + strand, within GFF1817at 0.720 kb on + strandat 0.721 kb on - strandat 0.755 kb on - strand, within GFF1818at 0.808 kb on - strand, within GFF1818at 0.964 kb on + strand, within GFF1818at 1.076 kb on - strand, within GFF1818at 1.166 kb on - strandat 1.227 kb on - strandat 1.231 kb on - strandat 1.444 kb on + strand, within GFF1819at 1.494 kb on - strand, within GFF1819at 1.526 kb on - strand, within GFF1819at 1.625 kb on + strand, within GFF1819

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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322 - GFF1817 0.41 -0.4
467 + GFF1817 0.65 -0.6
525 + GFF1817 0.74 +0.1
720 + -0.0
721 - +0.9
755 - GFF1818 0.15 +0.0
808 - GFF1818 0.27 +0.2
964 + GFF1818 0.61 -0.7
1,076 - GFF1818 0.86 +1.1
1,166 - +0.6
1,227 - +0.9
1,231 - -0.2
1,444 + GFF1819 0.22 -0.9
1,494 - GFF1819 0.28 +0.1
1,526 - GFF1819 0.31 +0.5
1,625 + GFF1819 0.43 -0.7

Or see this region's nucleotide sequence