Strain Fitness in Escherichia coli BL21 around ECD_04178

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04177 and ECD_04178 are separated by 19 nucleotides ECD_04177: ECD_04177 - N-acetylneuraminic acid mutarotase, at 4,446,162 to 4,447,268 _04177 ECD_04178: ECD_04178 - N-acetylnuraminic acid outer membrane channel protein, at 4,447,288 to 4,448,004 _04178 Position (kb) 4447 4448 4449Strain fitness (log2 ratio) -2 -1 0 1at 4446.386 kb on - strand, within ECD_04177at 4446.516 kb on - strand, within ECD_04177at 4446.762 kb on - strand, within ECD_04177at 4446.847 kb on + strand, within ECD_04177at 4446.848 kb on - strand, within ECD_04177at 4446.940 kb on + strand, within ECD_04177at 4446.941 kb on - strand, within ECD_04177at 4446.949 kb on - strand, within ECD_04177at 4447.022 kb on + strand, within ECD_04177at 4447.377 kb on - strand, within ECD_04178at 4447.393 kb on - strand, within ECD_04178at 4447.485 kb on - strand, within ECD_04178at 4447.486 kb on + strand, within ECD_04178at 4447.521 kb on + strand, within ECD_04178at 4447.530 kb on - strand, within ECD_04178at 4448.468 kb on + strandat 4448.809 kb on + strandat 4448.810 kb on - strandat 4448.858 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
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4,446,386 - ECD_04177 0.20 -0.1
4,446,516 - ECD_04177 0.32 -0.5
4,446,762 - ECD_04177 0.54 -1.9
4,446,847 + ECD_04177 0.62 +0.9
4,446,848 - ECD_04177 0.62 -1.7
4,446,940 + ECD_04177 0.70 -1.3
4,446,941 - ECD_04177 0.70 -0.8
4,446,949 - ECD_04177 0.71 -1.3
4,447,022 + ECD_04177 0.78 -0.1
4,447,377 - ECD_04178 0.12 -0.4
4,447,393 - ECD_04178 0.15 +0.2
4,447,485 - ECD_04178 0.27 -0.3
4,447,486 + ECD_04178 0.28 -0.4
4,447,521 + ECD_04178 0.32 -0.9
4,447,530 - ECD_04178 0.34 +0.1
4,448,468 + +0.6
4,448,809 + -0.9
4,448,810 - -2.4
4,448,858 + -2.0

Or see this region's nucleotide sequence