Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04124 and ECD_04125 overlap by 1 nucleotides ECD_04125 and ECD_04126 are separated by 353 nucleotides ECD_04126 and ECD_04127 are separated by 266 nucleotides
ECD_04124: ECD_04124 - valyl-tRNA synthetase, at 4,392,380 to 4,395,235
_04124
ECD_04125: ECD_04125 - DNA polymerase III, chi subunit, at 4,395,235 to 4,395,678
_04125
ECD_04126: ECD_04126 - multifunctional aminopeptidase A: a cyteinylglycinase, transcription regulator and site-specific recombination factor, at 4,396,032 to 4,397,543
_04126
ECD_04127: ECD_04127 - lipopolysaccharide export ABC permease, at 4,397,810 to 4,398,910
_04127
Position (kb)
4396
4397
4398 Strain fitness (log2 ratio)
-2
-1
0
1 at 4395.253 kb on - strand at 4395.679 kb on - strand at 4395.679 kb on - strand at 4395.679 kb on - strand at 4395.679 kb on - strand at 4395.681 kb on - strand at 4395.681 kb on - strand at 4395.681 kb on - strand at 4395.681 kb on - strand at 4395.708 kb on - strand at 4395.708 kb on - strand at 4395.720 kb on + strand at 4395.720 kb on + strand at 4395.721 kb on - strand at 4395.784 kb on + strand at 4395.784 kb on + strand at 4395.785 kb on - strand at 4395.785 kb on - strand at 4395.785 kb on - strand at 4395.819 kb on + strand at 4395.820 kb on - strand at 4395.854 kb on - strand at 4395.880 kb on + strand at 4395.916 kb on - strand at 4395.916 kb on - strand at 4395.916 kb on - strand at 4395.977 kb on - strand at 4396.034 kb on - strand at 4396.063 kb on - strand at 4396.163 kb on - strand at 4396.166 kb on + strand at 4396.167 kb on - strand at 4396.167 kb on - strand at 4396.450 kb on + strand, within ECD_04126 at 4396.451 kb on - strand, within ECD_04126 at 4396.451 kb on - strand, within ECD_04126 at 4396.451 kb on - strand, within ECD_04126 at 4396.451 kb on - strand, within ECD_04126 at 4396.455 kb on + strand, within ECD_04126 at 4396.615 kb on - strand, within ECD_04126 at 4396.615 kb on - strand, within ECD_04126 at 4396.615 kb on - strand, within ECD_04126 at 4396.664 kb on + strand, within ECD_04126 at 4396.665 kb on - strand, within ECD_04126 at 4396.665 kb on - strand, within ECD_04126 at 4396.665 kb on - strand, within ECD_04126 at 4396.665 kb on - strand, within ECD_04126 at 4396.670 kb on - strand, within ECD_04126 at 4396.670 kb on - strand, within ECD_04126 at 4396.890 kb on - strand, within ECD_04126 at 4396.903 kb on + strand, within ECD_04126 at 4396.903 kb on + strand, within ECD_04126 at 4396.904 kb on - strand, within ECD_04126 at 4397.132 kb on - strand, within ECD_04126 at 4397.177 kb on - strand, within ECD_04126 at 4397.181 kb on - strand, within ECD_04126 at 4397.181 kb on - strand, within ECD_04126 at 4397.250 kb on - strand, within ECD_04126 at 4397.403 kb on + strand at 4397.404 kb on - strand at 4397.404 kb on - strand at 4397.404 kb on - strand at 4397.420 kb on - strand at 4397.420 kb on - strand at 4397.535 kb on - strand at 4397.549 kb on - strand at 4397.549 kb on - strand at 4397.549 kb on - strand at 4397.564 kb on - strand at 4397.589 kb on - strand at 4397.589 kb on - strand at 4397.645 kb on + strand at 4397.645 kb on + strand at 4397.651 kb on + strand at 4397.702 kb on + strand at 4397.703 kb on - strand at 4397.703 kb on - strand at 4397.704 kb on + strand at 4397.705 kb on - strand at 4397.705 kb on - strand at 4397.705 kb on - strand at 4397.705 kb on - strand at 4397.705 kb on - strand at 4397.705 kb on - strand at 4397.709 kb on - strand at 4397.741 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 4,395,253 - +0.0 4,395,679 - +0.1 4,395,679 - +0.7 4,395,679 - -0.0 4,395,679 - -0.1 4,395,681 - +0.7 4,395,681 - +0.4 4,395,681 - -0.0 4,395,681 - +1.0 4,395,708 - -0.7 4,395,708 - +0.4 4,395,720 + -0.6 4,395,720 + -0.9 4,395,721 - +0.4 4,395,784 + -0.5 4,395,784 + -1.9 4,395,785 - +0.5 4,395,785 - -0.5 4,395,785 - +0.9 4,395,819 + +0.2 4,395,820 - +0.2 4,395,854 - +0.3 4,395,880 + -0.1 4,395,916 - +0.4 4,395,916 - +0.8 4,395,916 - +1.5 4,395,977 - +0.5 4,396,034 - +0.4 4,396,063 - +0.1 4,396,163 - -2.2 4,396,166 + -1.7 4,396,167 - -0.3 4,396,167 - -0.8 4,396,450 + ECD_04126 0.28 -2.3 4,396,451 - ECD_04126 0.28 +0.5 4,396,451 - ECD_04126 0.28 -0.4 4,396,451 - ECD_04126 0.28 +0.1 4,396,451 - ECD_04126 0.28 +0.2 4,396,455 + ECD_04126 0.28 -2.6 4,396,615 - ECD_04126 0.39 -0.0 4,396,615 - ECD_04126 0.39 +0.6 4,396,615 - ECD_04126 0.39 +0.3 4,396,664 + ECD_04126 0.42 -1.3 4,396,665 - ECD_04126 0.42 +0.1 4,396,665 - ECD_04126 0.42 +0.4 4,396,665 - ECD_04126 0.42 +0.2 4,396,665 - ECD_04126 0.42 -0.2 4,396,670 - ECD_04126 0.42 -0.3 4,396,670 - ECD_04126 0.42 +0.4 4,396,890 - ECD_04126 0.57 +0.9 4,396,903 + ECD_04126 0.58 -1.0 4,396,903 + ECD_04126 0.58 -2.0 4,396,904 - ECD_04126 0.58 +0.2 4,397,132 - ECD_04126 0.73 +1.0 4,397,177 - ECD_04126 0.76 +0.4 4,397,181 - ECD_04126 0.76 +0.4 4,397,181 - ECD_04126 0.76 +0.2 4,397,250 - ECD_04126 0.81 -0.2 4,397,403 + -1.2 4,397,404 - -0.3 4,397,404 - +0.9 4,397,404 - +0.2 4,397,420 - +0.5 4,397,420 - +0.3 4,397,535 - +0.1 4,397,549 - +0.6 4,397,549 - -0.3 4,397,549 - +0.1 4,397,564 - -0.2 4,397,589 - +0.3 4,397,589 - +1.0 4,397,645 + -0.2 4,397,645 + -1.9 4,397,651 + +0.8 4,397,702 + -0.9 4,397,703 - +0.6 4,397,703 - +0.9 4,397,704 + -0.4 4,397,705 - -0.8 4,397,705 - +0.4 4,397,705 - +0.1 4,397,705 - -0.3 4,397,705 - +0.8 4,397,705 - +0.5 4,397,709 - -0.5 4,397,741 + +0.2
Or see this region's nucleotide sequence