Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04064 and ECD_04065 overlap by 1 nucleotides ECD_04065 and ECD_04066 are separated by 128 nucleotides ECD_04066 and ECD_04067 are separated by 327 nucleotides ECD_04067 and ECD_04068 are separated by 6 nucleotides
ECD_04064: ECD_04064 - L-xylulose 5-phosphate 3-epimerase, at 4,329,366 to 4,330,220
_04064
ECD_04065: ECD_04065 - L-ribulose 5-phosphate 4-epimerase, at 4,330,220 to 4,330,906
_04065
ECD_04066: ECD_04066 - YhcN family protein, periplasmic, at 4,331,035 to 4,331,310
_04066
ECD_04067: ECD_04067 - 30S ribosomal subunit protein S6, at 4,331,638 to 4,332,033
_04067
ECD_04068: ECD_04068 - primosomal protein N, at 4,332,040 to 4,332,354
_04068
Position (kb) 4331
4332 Strain fitness (log2 ratio) -1
0
1 at 4330.095 kb on + strand, within ECD_04064 at 4330.242 kb on + strand at 4330.242 kb on + strand at 4330.243 kb on - strand at 4330.288 kb on + strand at 4330.397 kb on - strand, within ECD_04065 at 4330.397 kb on - strand, within ECD_04065 at 4330.575 kb on - strand, within ECD_04065 at 4330.694 kb on - strand, within ECD_04065 at 4330.694 kb on - strand, within ECD_04065 at 4330.694 kb on - strand, within ECD_04065 at 4330.712 kb on + strand, within ECD_04065 at 4330.813 kb on + strand, within ECD_04065 at 4330.813 kb on + strand, within ECD_04065 at 4330.814 kb on - strand, within ECD_04065 at 4330.816 kb on + strand, within ECD_04065 at 4330.817 kb on - strand, within ECD_04065 at 4330.889 kb on + strand at 4330.893 kb on - strand at 4330.905 kb on - strand at 4330.905 kb on - strand at 4330.942 kb on - strand at 4330.942 kb on - strand at 4331.004 kb on + strand at 4331.005 kb on - strand at 4331.026 kb on + strand at 4331.026 kb on + strand at 4331.027 kb on - strand at 4331.064 kb on + strand, within ECD_04066 at 4331.073 kb on + strand, within ECD_04066 at 4331.106 kb on - strand, within ECD_04066 at 4331.106 kb on - strand, within ECD_04066 at 4331.109 kb on - strand, within ECD_04066 at 4331.109 kb on - strand, within ECD_04066 at 4331.109 kb on - strand, within ECD_04066 at 4331.140 kb on + strand, within ECD_04066 at 4331.140 kb on + strand, within ECD_04066 at 4331.141 kb on - strand, within ECD_04066 at 4331.176 kb on - strand, within ECD_04066 at 4331.176 kb on - strand, within ECD_04066 at 4331.176 kb on - strand, within ECD_04066 at 4331.186 kb on + strand, within ECD_04066 at 4331.198 kb on - strand, within ECD_04066 at 4331.198 kb on - strand, within ECD_04066 at 4331.217 kb on + strand, within ECD_04066 at 4331.239 kb on - strand, within ECD_04066 at 4331.259 kb on + strand, within ECD_04066 at 4331.259 kb on + strand, within ECD_04066 at 4331.293 kb on + strand at 4331.310 kb on + strand at 4331.310 kb on + strand at 4331.310 kb on + strand at 4331.310 kb on + strand at 4331.310 kb on + strand at 4331.310 kb on + strand at 4331.310 kb on + strand at 4331.310 kb on + strand at 4331.311 kb on - strand at 4331.311 kb on - strand at 4331.311 kb on - strand at 4331.314 kb on + strand at 4331.315 kb on - strand at 4331.315 kb on - strand at 4331.315 kb on - strand at 4331.315 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 4,330,095 + ECD_04064 0.85 +0.3 4,330,242 + -0.1 4,330,242 + -0.4 4,330,243 - +0.3 4,330,288 + -1.4 4,330,397 - ECD_04065 0.26 +0.1 4,330,397 - ECD_04065 0.26 -0.3 4,330,575 - ECD_04065 0.52 +0.6 4,330,694 - ECD_04065 0.69 +0.2 4,330,694 - ECD_04065 0.69 +0.6 4,330,694 - ECD_04065 0.69 -0.7 4,330,712 + ECD_04065 0.72 -0.1 4,330,813 + ECD_04065 0.86 -0.5 4,330,813 + ECD_04065 0.86 -0.4 4,330,814 - ECD_04065 0.86 +0.3 4,330,816 + ECD_04065 0.87 +0.4 4,330,817 - ECD_04065 0.87 -0.6 4,330,889 + +0.1 4,330,893 - +0.4 4,330,905 - -0.2 4,330,905 - -0.2 4,330,942 - +0.0 4,330,942 - -0.2 4,331,004 + -0.1 4,331,005 - +0.3 4,331,026 + +0.2 4,331,026 + -0.4 4,331,027 - -0.2 4,331,064 + ECD_04066 0.11 +0.1 4,331,073 + ECD_04066 0.14 +0.1 4,331,106 - ECD_04066 0.26 -0.1 4,331,106 - ECD_04066 0.26 +0.9 4,331,109 - ECD_04066 0.27 -0.3 4,331,109 - ECD_04066 0.27 +0.2 4,331,109 - ECD_04066 0.27 -0.2 4,331,140 + ECD_04066 0.38 -0.1 4,331,140 + ECD_04066 0.38 +0.1 4,331,141 - ECD_04066 0.38 -0.2 4,331,176 - ECD_04066 0.51 +0.5 4,331,176 - ECD_04066 0.51 +0.1 4,331,176 - ECD_04066 0.51 +1.2 4,331,186 + ECD_04066 0.55 -0.5 4,331,198 - ECD_04066 0.59 +0.9 4,331,198 - ECD_04066 0.59 +0.4 4,331,217 + ECD_04066 0.66 -0.2 4,331,239 - ECD_04066 0.74 +0.3 4,331,259 + ECD_04066 0.81 +0.3 4,331,259 + ECD_04066 0.81 -0.2 4,331,293 + +0.3 4,331,310 + +0.9 4,331,310 + +0.7 4,331,310 + -0.6 4,331,310 + -0.1 4,331,310 + +0.5 4,331,310 + +0.5 4,331,310 + +0.3 4,331,310 + +0.8 4,331,311 - -0.9 4,331,311 - +0.0 4,331,311 - +0.0 4,331,314 + +0.7 4,331,315 - +0.8 4,331,315 - +0.3 4,331,315 - -0.2 4,331,315 - +1.1
Or see this region's nucleotide sequence