Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03972 and ECD_03973 overlap by 4 nucleotides ECD_03973 and ECD_03974 are separated by 0 nucleotides ECD_03974 and ECD_03975 are separated by 20 nucleotides ECD_03975 and ECD_03976 are separated by 66 nucleotides
ECD_03972: ECD_03972 - ribophosphonate triphosphate synthase subunit, at 4,227,850 to 4,228,434
_03972
ECD_03973: ECD_03973 - ribophosphonate triphosphate synthase subunit, at 4,228,431 to 4,228,883
_03973
ECD_03974: ECD_03974 - putative DNA-binding transcriptional regulator of phosphonate uptake and biodegradation, at 4,228,884 to 4,229,609
_03974
ECD_03975: ECD_03975 - phosphonate/organophosphate ester transporter, at 4,229,630 to 4,230,448
_03975
ECD_03976: ECD_03976 - phosphonate ABC transporter periplasmic binding protein, at 4,230,515 to 4,231,531
_03976
Position (kb) 4228
4229
4230 Strain fitness (log2 ratio) -1
0
1 at 4228.061 kb on - strand, within ECD_03972 at 4228.227 kb on + strand, within ECD_03972 at 4228.231 kb on + strand, within ECD_03972 at 4228.231 kb on + strand, within ECD_03972 at 4228.231 kb on + strand, within ECD_03972 at 4228.231 kb on + strand, within ECD_03972 at 4228.231 kb on + strand, within ECD_03972 at 4228.232 kb on - strand, within ECD_03972 at 4228.299 kb on + strand, within ECD_03972 at 4228.413 kb on + strand at 4228.413 kb on + strand at 4228.414 kb on - strand at 4228.458 kb on - strand at 4228.514 kb on + strand, within ECD_03973 at 4228.551 kb on + strand, within ECD_03973 at 4228.643 kb on - strand, within ECD_03973 at 4228.744 kb on - strand, within ECD_03973 at 4228.778 kb on - strand, within ECD_03973 at 4229.001 kb on - strand, within ECD_03974 at 4229.001 kb on - strand, within ECD_03974 at 4229.001 kb on - strand, within ECD_03974 at 4229.164 kb on + strand, within ECD_03974 at 4229.165 kb on - strand, within ECD_03974 at 4229.165 kb on - strand, within ECD_03974 at 4229.598 kb on - strand at 4229.609 kb on + strand at 4229.609 kb on + strand at 4229.609 kb on + strand at 4229.609 kb on + strand at 4229.610 kb on - strand at 4229.610 kb on - strand at 4229.610 kb on - strand at 4229.613 kb on + strand at 4229.614 kb on - strand at 4229.614 kb on - strand at 4229.614 kb on - strand at 4229.635 kb on + strand at 4229.635 kb on + strand at 4229.635 kb on + strand at 4229.635 kb on + strand at 4229.644 kb on + strand at 4229.644 kb on + strand at 4229.644 kb on + strand at 4229.692 kb on + strand at 4229.829 kb on + strand, within ECD_03975 at 4229.829 kb on + strand, within ECD_03975 at 4229.869 kb on - strand, within ECD_03975 at 4229.988 kb on - strand, within ECD_03975 at 4230.099 kb on + strand, within ECD_03975 at 4230.100 kb on - strand, within ECD_03975 at 4230.216 kb on + strand, within ECD_03975 at 4230.217 kb on - strand, within ECD_03975 at 4230.217 kb on - strand, within ECD_03975 at 4230.509 kb on + strand at 4230.517 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 4,228,061 - ECD_03972 0.36 -0.2 4,228,227 + ECD_03972 0.64 -0.5 4,228,231 + ECD_03972 0.65 -0.1 4,228,231 + ECD_03972 0.65 +1.4 4,228,231 + ECD_03972 0.65 -0.5 4,228,231 + ECD_03972 0.65 +0.4 4,228,231 + ECD_03972 0.65 +0.2 4,228,232 - ECD_03972 0.65 -0.6 4,228,299 + ECD_03972 0.77 -0.3 4,228,413 + +0.3 4,228,413 + -0.5 4,228,414 - -0.1 4,228,458 - +0.4 4,228,514 + ECD_03973 0.18 -0.0 4,228,551 + ECD_03973 0.26 +0.6 4,228,643 - ECD_03973 0.47 -0.3 4,228,744 - ECD_03973 0.69 -0.2 4,228,778 - ECD_03973 0.77 -0.2 4,229,001 - ECD_03974 0.16 +0.7 4,229,001 - ECD_03974 0.16 +0.0 4,229,001 - ECD_03974 0.16 +0.3 4,229,164 + ECD_03974 0.39 -0.2 4,229,165 - ECD_03974 0.39 +0.0 4,229,165 - ECD_03974 0.39 +1.0 4,229,598 - -0.4 4,229,609 + -0.5 4,229,609 + -0.0 4,229,609 + -0.2 4,229,609 + -0.1 4,229,610 - -0.8 4,229,610 - -0.5 4,229,610 - -1.3 4,229,613 + -0.4 4,229,614 - -0.3 4,229,614 - -0.9 4,229,614 - -1.0 4,229,635 + +0.1 4,229,635 + -0.1 4,229,635 + +0.1 4,229,635 + +0.3 4,229,644 + -0.2 4,229,644 + -0.0 4,229,644 + +0.8 4,229,692 + -0.3 4,229,829 + ECD_03975 0.24 +0.4 4,229,829 + ECD_03975 0.24 -0.9 4,229,869 - ECD_03975 0.29 -1.0 4,229,988 - ECD_03975 0.44 +0.2 4,230,099 + ECD_03975 0.57 -0.2 4,230,100 - ECD_03975 0.57 +0.2 4,230,216 + ECD_03975 0.72 -0.4 4,230,217 - ECD_03975 0.72 -0.6 4,230,217 - ECD_03975 0.72 -1.1 4,230,509 + +0.5 4,230,517 - +0.6
Or see this region's nucleotide sequence