Strain Fitness in Escherichia coli BL21 around ECD_02282

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02281 and ECD_02282 are separated by 73 nucleotidesECD_02282 and ECD_02283 are separated by 69 nucleotides ECD_02281: ECD_02281 - acetyl-CoA:oxalate CoA-transferase, at 2,365,911 to 2,367,056 _02281 ECD_02282: ECD_02282 - putative transporter, at 2,367,130 to 2,368,074 _02282 ECD_02283: ECD_02283 - oxalyl CoA decarboxylase, ThDP-dependent, at 2,368,144 to 2,369,838 _02283 Position (kb) 2367 2368 2369Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2366.353 kb on + strand, within ECD_02281at 2366.401 kb on + strand, within ECD_02281at 2366.552 kb on + strand, within ECD_02281at 2366.630 kb on - strand, within ECD_02281at 2366.684 kb on - strand, within ECD_02281at 2366.745 kb on - strand, within ECD_02281at 2366.858 kb on + strand, within ECD_02281at 2366.890 kb on + strand, within ECD_02281at 2367.047 kb on + strandat 2367.152 kb on + strandat 2368.224 kb on + strandat 2368.298 kb on + strandat 2368.450 kb on - strand, within ECD_02283at 2368.954 kb on - strand, within ECD_02283at 2368.975 kb on - strand, within ECD_02283

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
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2,366,353 + ECD_02281 0.39 -2.4
2,366,401 + ECD_02281 0.43 -0.8
2,366,552 + ECD_02281 0.56 -1.2
2,366,630 - ECD_02281 0.63 +0.2
2,366,684 - ECD_02281 0.67 -1.0
2,366,745 - ECD_02281 0.73 -1.7
2,366,858 + ECD_02281 0.83 +2.0
2,366,890 + ECD_02281 0.85 -1.4
2,367,047 + -2.9
2,367,152 + -0.5
2,368,224 + -2.8
2,368,298 + -1.6
2,368,450 - ECD_02283 0.18 -1.3
2,368,954 - ECD_02283 0.48 -2.6
2,368,975 - ECD_02283 0.49 -1.2

Or see this region's nucleotide sequence