Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02191 and ECD_02192 are separated by 88 nucleotides ECD_02192 and ECD_02193 are separated by 78 nucleotides ECD_02193 and ECD_02194 are separated by 54 nucleotides ECD_02194 and ECD_02195 are separated by 64 nucleotides
ECD_02191: ECD_02191 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase; SEPHCHC synthase, at 2,267,763 to 2,269,433
_02191
ECD_02192: ECD_02192 - isochorismate synthase 2, at 2,269,522 to 2,270,817
_02192
ECD_02193: ECD_02193 - putative membrane-anchored DUF883 family ribosome-binding protein, at 2,270,896 to 2,271,201
_02193
ECD_02194: ECD_02194 - GNAT family putative N-acetyltransferase, at 2,271,256 to 2,271,717
_02194
ECD_02195: ECD_02195 - RNase BN, tRNA processing enzyme, at 2,271,782 to 2,272,699
_02195
Position (kb)
2269
2270
2271 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2268.884 kb on + strand, within ECD_02191 at 2268.885 kb on - strand, within ECD_02191 at 2268.885 kb on - strand, within ECD_02191 at 2268.911 kb on - strand, within ECD_02191 at 2269.102 kb on - strand, within ECD_02191 at 2269.331 kb on + strand at 2269.416 kb on - strand at 2269.426 kb on - strand at 2269.426 kb on - strand at 2269.461 kb on + strand at 2269.466 kb on - strand at 2269.468 kb on - strand at 2269.468 kb on - strand at 2269.484 kb on - strand at 2269.624 kb on + strand at 2269.624 kb on + strand at 2269.624 kb on + strand at 2269.811 kb on - strand, within ECD_02192 at 2269.931 kb on - strand, within ECD_02192 at 2270.006 kb on - strand, within ECD_02192 at 2270.035 kb on - strand, within ECD_02192 at 2270.498 kb on - strand, within ECD_02192 at 2270.644 kb on - strand, within ECD_02192 at 2270.806 kb on - strand at 2270.921 kb on - strand at 2270.979 kb on - strand, within ECD_02193 at 2270.979 kb on - strand, within ECD_02193 at 2271.015 kb on - strand, within ECD_02193 at 2271.018 kb on - strand, within ECD_02193 at 2271.018 kb on - strand, within ECD_02193 at 2271.018 kb on - strand, within ECD_02193 at 2271.018 kb on - strand, within ECD_02193 at 2271.018 kb on - strand, within ECD_02193 at 2271.095 kb on + strand, within ECD_02193 at 2271.180 kb on + strand at 2271.234 kb on - strand at 2271.237 kb on + strand at 2271.238 kb on - strand at 2271.238 kb on - strand at 2271.311 kb on + strand, within ECD_02194 at 2271.347 kb on + strand, within ECD_02194 at 2271.409 kb on - strand, within ECD_02194 at 2271.666 kb on - strand, within ECD_02194 at 2271.718 kb on - strand at 2271.737 kb on + strand at 2271.737 kb on + strand at 2271.738 kb on - strand at 2271.738 kb on - strand at 2271.738 kb on - strand at 2271.745 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 2,268,884 + ECD_02191 0.67 -1.2 2,268,885 - ECD_02191 0.67 +0.9 2,268,885 - ECD_02191 0.67 +0.9 2,268,911 - ECD_02191 0.69 +0.5 2,269,102 - ECD_02191 0.80 -1.7 2,269,331 + +1.0 2,269,416 - -1.3 2,269,426 - -0.3 2,269,426 - -1.0 2,269,461 + -2.7 2,269,466 - +0.0 2,269,468 - -0.3 2,269,468 - +1.2 2,269,484 - -1.2 2,269,624 + -1.5 2,269,624 + -0.3 2,269,624 + -2.8 2,269,811 - ECD_02192 0.22 -1.1 2,269,931 - ECD_02192 0.32 -1.0 2,270,006 - ECD_02192 0.37 -0.4 2,270,035 - ECD_02192 0.40 -0.7 2,270,498 - ECD_02192 0.75 +1.3 2,270,644 - ECD_02192 0.87 +0.1 2,270,806 - -2.3 2,270,921 - -0.6 2,270,979 - ECD_02193 0.27 -0.3 2,270,979 - ECD_02193 0.27 -0.6 2,271,015 - ECD_02193 0.39 -0.4 2,271,018 - ECD_02193 0.40 +0.2 2,271,018 - ECD_02193 0.40 +0.9 2,271,018 - ECD_02193 0.40 -1.3 2,271,018 - ECD_02193 0.40 +0.7 2,271,018 - ECD_02193 0.40 -0.4 2,271,095 + ECD_02193 0.65 -2.7 2,271,180 + +1.3 2,271,234 - +0.6 2,271,237 + -2.1 2,271,238 - +0.3 2,271,238 - +0.6 2,271,311 + ECD_02194 0.12 -1.4 2,271,347 + ECD_02194 0.20 -1.6 2,271,409 - ECD_02194 0.33 +0.0 2,271,666 - ECD_02194 0.89 +0.4 2,271,718 - -0.2 2,271,737 + -0.9 2,271,737 + -0.2 2,271,738 - +0.5 2,271,738 - +1.2 2,271,738 - +0.8 2,271,745 - +0.3
Or see this region's nucleotide sequence