Strain Fitness in Escherichia coli BL21 around ECD_02171

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02170 and ECD_02171 are separated by 40 nucleotidesECD_02171 and ECD_02172 are separated by 17 nucleotides ECD_02170: ECD_02170 - transposase_31 family protein, at 2,247,273 to 2,248,175 _02170 ECD_02171: ECD_02171 - 2-keto-3-deoxy-L-rhamnonate aldolase, at 2,248,216 to 2,249,019 _02171 ECD_02172: ECD_02172 - putative L-rhamnonate transporter, at 2,249,037 to 2,250,326 _02172 Position (kb) 2248 2249 2250Strain fitness (log2 ratio) -2 -1 0 1 2at 2247.251 kb on - strandat 2247.675 kb on - strand, within ECD_02170at 2247.758 kb on - strand, within ECD_02170at 2247.790 kb on + strand, within ECD_02170at 2247.791 kb on - strand, within ECD_02170at 2247.791 kb on - strand, within ECD_02170at 2247.898 kb on + strand, within ECD_02170at 2247.911 kb on + strand, within ECD_02170at 2247.911 kb on + strand, within ECD_02170at 2248.058 kb on + strand, within ECD_02170at 2248.142 kb on - strandat 2248.221 kb on - strandat 2248.258 kb on - strandat 2248.771 kb on - strand, within ECD_02171at 2248.932 kb on - strand, within ECD_02171at 2248.932 kb on - strand, within ECD_02171at 2248.932 kb on - strand, within ECD_02171at 2249.009 kb on - strandat 2249.034 kb on + strandat 2249.034 kb on + strandat 2249.038 kb on + strandat 2249.039 kb on - strandat 2249.599 kb on - strand, within ECD_02172at 2249.599 kb on - strand, within ECD_02172at 2249.891 kb on - strand, within ECD_02172at 2249.891 kb on - strand, within ECD_02172

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
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2,247,251 - -0.4
2,247,675 - ECD_02170 0.45 -0.7
2,247,758 - ECD_02170 0.54 -1.3
2,247,790 + ECD_02170 0.57 +2.1
2,247,791 - ECD_02170 0.57 +1.1
2,247,791 - ECD_02170 0.57 -0.9
2,247,898 + ECD_02170 0.69 +0.2
2,247,911 + ECD_02170 0.71 -1.5
2,247,911 + ECD_02170 0.71 -1.8
2,248,058 + ECD_02170 0.87 -0.7
2,248,142 - -0.7
2,248,221 - -0.1
2,248,258 - -1.5
2,248,771 - ECD_02171 0.69 -0.1
2,248,932 - ECD_02171 0.89 -0.2
2,248,932 - ECD_02171 0.89 +0.9
2,248,932 - ECD_02171 0.89 -0.3
2,249,009 - -1.0
2,249,034 + -1.3
2,249,034 + +0.1
2,249,038 + -0.9
2,249,039 - +0.1
2,249,599 - ECD_02172 0.44 +0.1
2,249,599 - ECD_02172 0.44 -1.5
2,249,891 - ECD_02172 0.66 -0.1
2,249,891 - ECD_02172 0.66 +1.0

Or see this region's nucleotide sequence