Strain Fitness in Escherichia coli BL21 around ECD_02089

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02087 and ECD_02088 are separated by 73 nucleotidesECD_02088 and ECD_02089 are separated by 2 nucleotidesECD_02089 and ECD_02090 are separated by 55 nucleotides ECD_02087: ECD_02087 - UPF0324 family inner membrane protein, at 2,144,616 to 2,145,665 _02087 ECD_02088: ECD_02088 - endonuclease IV with intrinsic 3'-5' exonuclease activity, at 2,145,739 to 2,146,596 _02088 ECD_02089: ECD_02089 - putative kinase, at 2,146,599 to 2,147,687 _02089 ECD_02090: ECD_02090 - nucleoside permease, at 2,147,743 to 2,148,993 _02090 Position (kb) 2146 2147 2148Strain fitness (log2 ratio) -3 -2 -1 0 1at 2145.636 kb on - strandat 2145.671 kb on + strandat 2145.746 kb on - strandat 2145.919 kb on + strand, within ECD_02088at 2145.952 kb on + strand, within ECD_02088at 2146.013 kb on + strand, within ECD_02088at 2146.206 kb on + strand, within ECD_02088at 2146.275 kb on + strand, within ECD_02088at 2146.275 kb on + strand, within ECD_02088at 2146.276 kb on - strand, within ECD_02088at 2146.353 kb on + strand, within ECD_02088at 2146.365 kb on + strand, within ECD_02088at 2146.370 kb on - strand, within ECD_02088at 2146.709 kb on + strand, within ECD_02089at 2146.710 kb on - strand, within ECD_02089at 2146.916 kb on - strand, within ECD_02089at 2147.150 kb on - strand, within ECD_02089at 2147.425 kb on - strand, within ECD_02089at 2147.549 kb on + strand, within ECD_02089at 2147.632 kb on + strandat 2147.685 kb on + strandat 2147.773 kb on - strandat 2148.156 kb on + strand, within ECD_02090at 2148.587 kb on - strand, within ECD_02090at 2148.602 kb on - strand, within ECD_02090

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
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2,145,636 - +1.3
2,145,671 + -1.1
2,145,746 - +0.8
2,145,919 + ECD_02088 0.21 -1.5
2,145,952 + ECD_02088 0.25 -0.4
2,146,013 + ECD_02088 0.32 +0.1
2,146,206 + ECD_02088 0.54 -0.1
2,146,275 + ECD_02088 0.62 +0.4
2,146,275 + ECD_02088 0.62 +0.3
2,146,276 - ECD_02088 0.63 -0.3
2,146,353 + ECD_02088 0.72 +0.7
2,146,365 + ECD_02088 0.73 +0.9
2,146,370 - ECD_02088 0.74 -0.6
2,146,709 + ECD_02089 0.10 -0.5
2,146,710 - ECD_02089 0.10 -0.7
2,146,916 - ECD_02089 0.29 -1.0
2,147,150 - ECD_02089 0.51 -0.1
2,147,425 - ECD_02089 0.76 -1.4
2,147,549 + ECD_02089 0.87 -2.9
2,147,632 + +0.3
2,147,685 + -0.1
2,147,773 - -0.5
2,148,156 + ECD_02090 0.33 -0.9
2,148,587 - ECD_02090 0.67 +1.4
2,148,602 - ECD_02090 0.69 -1.1

Or see this region's nucleotide sequence