Strain Fitness in Escherichia coli BL21 around ECD_01914

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01913 and ECD_01914 are separated by 208 nucleotidesECD_01914 and ECD_01915 are separated by 42 nucleotidesECD_01915 and ECD_01916 are separated by 13 nucleotides ECD_01913: ECD_01913 - D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6b, at 1,977,625 to 1,978,791 _01913 ECD_01914: ECD_01914 - exodeoxyribonuclease I; exonuclease I, at 1,979,000 to 1,980,427 _01914 ECD_01915: ECD_01915 - putative TusA family sulfurtransferase, at 1,980,470 to 1,980,697 _01915 ECD_01916: ECD_01916 - UPF0394 family inner membrane protein, at 1,980,711 to 1,981,769 _01916 Position (kb) 1978 1979 1980 1981Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1978.087 kb on - strand, within ECD_01913at 1978.187 kb on + strand, within ECD_01913at 1978.188 kb on - strand, within ECD_01913at 1978.188 kb on - strand, within ECD_01913at 1978.248 kb on - strand, within ECD_01913at 1978.257 kb on + strand, within ECD_01913at 1978.580 kb on + strand, within ECD_01913at 1978.581 kb on - strand, within ECD_01913at 1979.353 kb on + strand, within ECD_01914at 1979.432 kb on + strand, within ECD_01914at 1979.974 kb on + strand, within ECD_01914at 1980.103 kb on + strand, within ECD_01914at 1980.103 kb on + strand, within ECD_01914at 1980.103 kb on + strand, within ECD_01914at 1980.260 kb on + strand, within ECD_01914at 1980.597 kb on - strand, within ECD_01915at 1980.645 kb on - strand, within ECD_01915at 1980.702 kb on - strandat 1980.709 kb on - strandat 1980.713 kb on - strandat 1980.761 kb on - strandat 1980.761 kb on - strandat 1980.802 kb on - strandat 1980.901 kb on - strand, within ECD_01916at 1980.922 kb on - strand, within ECD_01916at 1980.922 kb on - strand, within ECD_01916at 1981.026 kb on - strand, within ECD_01916at 1981.101 kb on - strand, within ECD_01916at 1981.338 kb on - strand, within ECD_01916at 1981.344 kb on - strand, within ECD_01916at 1981.344 kb on - strand, within ECD_01916at 1981.422 kb on - strand, within ECD_01916at 1981.422 kb on - strand, within ECD_01916at 1981.422 kb on - strand, within ECD_01916

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
remove
1,978,087 - ECD_01913 0.40 -0.5
1,978,187 + ECD_01913 0.48 +0.2
1,978,188 - ECD_01913 0.48 -1.5
1,978,188 - ECD_01913 0.48 +3.0
1,978,248 - ECD_01913 0.53 -2.1
1,978,257 + ECD_01913 0.54 -1.1
1,978,580 + ECD_01913 0.82 +2.1
1,978,581 - ECD_01913 0.82 +0.2
1,979,353 + ECD_01914 0.25 -1.7
1,979,432 + ECD_01914 0.30 -0.3
1,979,974 + ECD_01914 0.68 -1.1
1,980,103 + ECD_01914 0.77 -0.3
1,980,103 + ECD_01914 0.77 -1.0
1,980,103 + ECD_01914 0.77 -0.7
1,980,260 + ECD_01914 0.88 -0.1
1,980,597 - ECD_01915 0.56 -2.5
1,980,645 - ECD_01915 0.77 -0.7
1,980,702 - -0.0
1,980,709 - -1.8
1,980,713 - -1.5
1,980,761 - -2.0
1,980,761 - +0.5
1,980,802 - -0.1
1,980,901 - ECD_01916 0.18 -0.4
1,980,922 - ECD_01916 0.20 +0.5
1,980,922 - ECD_01916 0.20 -0.7
1,981,026 - ECD_01916 0.30 -0.1
1,981,101 - ECD_01916 0.37 +0.1
1,981,338 - ECD_01916 0.59 +0.4
1,981,344 - ECD_01916 0.60 -1.9
1,981,344 - ECD_01916 0.60 -1.6
1,981,422 - ECD_01916 0.67 -0.5
1,981,422 - ECD_01916 0.67 -0.6
1,981,422 - ECD_01916 0.67 -0.7

Or see this region's nucleotide sequence