Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01913 and ECD_01914 are separated by 208 nucleotides ECD_01914 and ECD_01915 are separated by 42 nucleotides ECD_01915 and ECD_01916 are separated by 13 nucleotides
ECD_01913: ECD_01913 - D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6b, at 1,977,625 to 1,978,791
_01913
ECD_01914: ECD_01914 - exodeoxyribonuclease I; exonuclease I, at 1,979,000 to 1,980,427
_01914
ECD_01915: ECD_01915 - putative TusA family sulfurtransferase, at 1,980,470 to 1,980,697
_01915
ECD_01916: ECD_01916 - UPF0394 family inner membrane protein, at 1,980,711 to 1,981,769
_01916
Position (kb)
1978
1979
1980
1981 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1978.087 kb on - strand, within ECD_01913 at 1978.187 kb on + strand, within ECD_01913 at 1978.188 kb on - strand, within ECD_01913 at 1978.188 kb on - strand, within ECD_01913 at 1978.248 kb on - strand, within ECD_01913 at 1978.257 kb on + strand, within ECD_01913 at 1978.580 kb on + strand, within ECD_01913 at 1978.581 kb on - strand, within ECD_01913 at 1979.353 kb on + strand, within ECD_01914 at 1979.432 kb on + strand, within ECD_01914 at 1979.974 kb on + strand, within ECD_01914 at 1980.103 kb on + strand, within ECD_01914 at 1980.103 kb on + strand, within ECD_01914 at 1980.103 kb on + strand, within ECD_01914 at 1980.260 kb on + strand, within ECD_01914 at 1980.597 kb on - strand, within ECD_01915 at 1980.645 kb on - strand, within ECD_01915 at 1980.702 kb on - strand at 1980.709 kb on - strand at 1980.713 kb on - strand at 1980.761 kb on - strand at 1980.761 kb on - strand at 1980.802 kb on - strand at 1980.901 kb on - strand, within ECD_01916 at 1980.922 kb on - strand, within ECD_01916 at 1980.922 kb on - strand, within ECD_01916 at 1981.026 kb on - strand, within ECD_01916 at 1981.101 kb on - strand, within ECD_01916 at 1981.338 kb on - strand, within ECD_01916 at 1981.344 kb on - strand, within ECD_01916 at 1981.344 kb on - strand, within ECD_01916 at 1981.422 kb on - strand, within ECD_01916 at 1981.422 kb on - strand, within ECD_01916 at 1981.422 kb on - strand, within ECD_01916
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 1,978,087 - ECD_01913 0.40 -0.5 1,978,187 + ECD_01913 0.48 +0.2 1,978,188 - ECD_01913 0.48 -1.5 1,978,188 - ECD_01913 0.48 +3.0 1,978,248 - ECD_01913 0.53 -2.1 1,978,257 + ECD_01913 0.54 -1.1 1,978,580 + ECD_01913 0.82 +2.1 1,978,581 - ECD_01913 0.82 +0.2 1,979,353 + ECD_01914 0.25 -1.7 1,979,432 + ECD_01914 0.30 -0.3 1,979,974 + ECD_01914 0.68 -1.1 1,980,103 + ECD_01914 0.77 -0.3 1,980,103 + ECD_01914 0.77 -1.0 1,980,103 + ECD_01914 0.77 -0.7 1,980,260 + ECD_01914 0.88 -0.1 1,980,597 - ECD_01915 0.56 -2.5 1,980,645 - ECD_01915 0.77 -0.7 1,980,702 - -0.0 1,980,709 - -1.8 1,980,713 - -1.5 1,980,761 - -2.0 1,980,761 - +0.5 1,980,802 - -0.1 1,980,901 - ECD_01916 0.18 -0.4 1,980,922 - ECD_01916 0.20 +0.5 1,980,922 - ECD_01916 0.20 -0.7 1,981,026 - ECD_01916 0.30 -0.1 1,981,101 - ECD_01916 0.37 +0.1 1,981,338 - ECD_01916 0.59 +0.4 1,981,344 - ECD_01916 0.60 -1.9 1,981,344 - ECD_01916 0.60 -1.6 1,981,422 - ECD_01916 0.67 -0.5 1,981,422 - ECD_01916 0.67 -0.6 1,981,422 - ECD_01916 0.67 -0.7
Or see this region's nucleotide sequence