Strain Fitness in Escherichia coli BL21 around ECD_01823

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01822 and ECD_01823 are separated by 234 nucleotidesECD_01823 and ECD_01824 are separated by 337 nucleotides ECD_01822: ECD_01822 - 6-phosphogluconate dehydratase, at 1,878,517 to 1,880,328 _01822 ECD_01823: ECD_01823 - glucose-6-phosphate 1-dehydrogenase, at 1,880,563 to 1,882,038 _01823 ECD_01824: ECD_01824 - putative DNA-binding transcriptional regulator, at 1,882,376 to 1,883,245 _01824 Position (kb) 1880 1881 1882 1883Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1879.659 kb on - strand, within ECD_01822at 1879.686 kb on - strand, within ECD_01822at 1879.686 kb on - strand, within ECD_01822at 1879.949 kb on - strand, within ECD_01822at 1880.262 kb on - strandat 1880.262 kb on - strandat 1882.051 kb on - strandat 1882.056 kb on - strandat 1882.056 kb on - strandat 1882.072 kb on - strandat 1882.072 kb on - strandat 1882.382 kb on - strandat 1882.668 kb on + strand, within ECD_01824at 1882.819 kb on + strand, within ECD_01824at 1882.885 kb on + strand, within ECD_01824at 1882.885 kb on + strand, within ECD_01824at 1882.886 kb on - strand, within ECD_01824

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
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1,879,659 - ECD_01822 0.63 -0.0
1,879,686 - ECD_01822 0.65 -2.2
1,879,686 - ECD_01822 0.65 -1.4
1,879,949 - ECD_01822 0.79 -0.5
1,880,262 - +0.2
1,880,262 - -0.9
1,882,051 - +3.0
1,882,056 - -0.2
1,882,056 - -0.1
1,882,072 - +1.1
1,882,072 - +0.4
1,882,382 - +0.6
1,882,668 + ECD_01824 0.34 +0.6
1,882,819 + ECD_01824 0.51 +1.4
1,882,885 + ECD_01824 0.59 +1.5
1,882,885 + ECD_01824 0.59 -0.0
1,882,886 - ECD_01824 0.59 -0.8

Or see this region's nucleotide sequence