Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01801 and ECD_01802 are separated by 19 nucleotides ECD_01802 and ECD_01803 are separated by 96 nucleotides ECD_01803 and ECD_01804 are separated by 75 nucleotides
ECD_01801: ECD_01801 - carboxy-terminal protease for penicillin-binding protein 3, at 1,858,493 to 1,860,541
_01801
ECD_01802: ECD_01802 - RNA chaperone, putative ProP translation regulator, at 1,860,561 to 1,861,259
_01802
ECD_01803: ECD_01803 - free methionine-(R)-sulfoxide reductase, at 1,861,356 to 1,861,907
_01803
ECD_01804: ECD_01804 - inner membrane PqiA domain protein, at 1,861,983 to 1,863,266
_01804
Position (kb)
1861
1862 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1860.467 kb on - strand at 1860.474 kb on - strand at 1860.642 kb on + strand, within ECD_01802 at 1860.646 kb on - strand, within ECD_01802 at 1860.973 kb on - strand, within ECD_01802 at 1860.973 kb on - strand, within ECD_01802 at 1860.973 kb on - strand, within ECD_01802 at 1860.973 kb on - strand, within ECD_01802 at 1860.973 kb on - strand, within ECD_01802 at 1860.973 kb on - strand, within ECD_01802 at 1860.973 kb on - strand, within ECD_01802 at 1861.070 kb on - strand, within ECD_01802 at 1861.090 kb on - strand, within ECD_01802 at 1861.245 kb on - strand at 1861.245 kb on - strand at 1861.245 kb on - strand at 1861.273 kb on + strand at 1861.284 kb on + strand at 1861.284 kb on + strand at 1861.318 kb on - strand at 1861.318 kb on - strand at 1861.318 kb on - strand at 1861.319 kb on + strand at 1861.320 kb on - strand at 1861.320 kb on - strand at 1861.320 kb on - strand at 1861.341 kb on + strand at 1861.342 kb on - strand at 1861.435 kb on - strand, within ECD_01803 at 1861.435 kb on - strand, within ECD_01803 at 1861.435 kb on - strand, within ECD_01803 at 1861.476 kb on - strand, within ECD_01803 at 1861.562 kb on + strand, within ECD_01803 at 1861.729 kb on - strand, within ECD_01803 at 1861.748 kb on - strand, within ECD_01803 at 1861.748 kb on - strand, within ECD_01803 at 1861.748 kb on - strand, within ECD_01803 at 1861.857 kb on - strand at 1861.908 kb on + strand at 1862.263 kb on + strand, within ECD_01804 at 1862.394 kb on + strand, within ECD_01804 at 1862.815 kb on + strand, within ECD_01804 at 1862.834 kb on + strand, within ECD_01804 at 1862.835 kb on - strand, within ECD_01804
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 1,860,467 - -0.8 1,860,474 - -2.3 1,860,642 + ECD_01802 0.12 +0.0 1,860,646 - ECD_01802 0.12 +1.3 1,860,973 - ECD_01802 0.59 +0.8 1,860,973 - ECD_01802 0.59 +1.1 1,860,973 - ECD_01802 0.59 +1.4 1,860,973 - ECD_01802 0.59 +0.6 1,860,973 - ECD_01802 0.59 +1.7 1,860,973 - ECD_01802 0.59 +0.1 1,860,973 - ECD_01802 0.59 +0.8 1,861,070 - ECD_01802 0.73 +2.1 1,861,090 - ECD_01802 0.76 +0.8 1,861,245 - +3.0 1,861,245 - +1.3 1,861,245 - +1.0 1,861,273 + +1.3 1,861,284 + -0.2 1,861,284 + -1.1 1,861,318 - +0.1 1,861,318 - -1.0 1,861,318 - +3.2 1,861,319 + -1.8 1,861,320 - -0.5 1,861,320 - +0.6 1,861,320 - +0.5 1,861,341 + -1.8 1,861,342 - +0.6 1,861,435 - ECD_01803 0.14 -1.3 1,861,435 - ECD_01803 0.14 +0.2 1,861,435 - ECD_01803 0.14 +0.3 1,861,476 - ECD_01803 0.22 -0.3 1,861,562 + ECD_01803 0.37 +2.3 1,861,729 - ECD_01803 0.68 -0.3 1,861,748 - ECD_01803 0.71 -0.1 1,861,748 - ECD_01803 0.71 +1.5 1,861,748 - ECD_01803 0.71 +0.4 1,861,857 - +0.1 1,861,908 + +0.5 1,862,263 + ECD_01804 0.22 -0.4 1,862,394 + ECD_01804 0.32 -1.1 1,862,815 + ECD_01804 0.65 -0.4 1,862,834 + ECD_01804 0.66 +0.9 1,862,835 - ECD_01804 0.66 -0.4
Or see this region's nucleotide sequence