Strain Fitness in Escherichia coli BL21 around ECD_01799

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01798 and ECD_01799 are separated by 176 nucleotidesECD_01799 and ECD_01800 are separated by 45 nucleotides ECD_01798: ECD_01798 - KDG regulon transcriptional repressor, at 1,855,033 to 1,855,824 _01798 ECD_01799: ECD_01799 - putative transporter, at 1,856,001 to 1,857,374 _01799 ECD_01800: ECD_01800 - putative endopeptidase, at 1,857,420 to 1,858,301 _01800 Position (kb) 1856 1857 1858Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1855.104 kb on - strandat 1855.277 kb on - strand, within ECD_01798at 1855.318 kb on - strand, within ECD_01798at 1855.428 kb on - strand, within ECD_01798at 1855.443 kb on - strand, within ECD_01798at 1855.447 kb on - strand, within ECD_01798at 1855.447 kb on - strand, within ECD_01798at 1855.447 kb on - strand, within ECD_01798at 1855.474 kb on - strand, within ECD_01798at 1855.504 kb on - strand, within ECD_01798at 1855.670 kb on - strand, within ECD_01798at 1856.338 kb on + strand, within ECD_01799at 1856.654 kb on + strand, within ECD_01799at 1856.976 kb on + strand, within ECD_01799at 1857.155 kb on + strand, within ECD_01799at 1857.343 kb on + strandat 1857.422 kb on - strandat 1857.431 kb on - strandat 1857.510 kb on - strand, within ECD_01800at 1857.719 kb on - strand, within ECD_01800at 1858.007 kb on - strand, within ECD_01800at 1858.062 kb on - strand, within ECD_01800at 1858.126 kb on - strand, within ECD_01800at 1858.222 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
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1,855,104 - +1.3
1,855,277 - ECD_01798 0.31 +2.1
1,855,318 - ECD_01798 0.36 +1.4
1,855,428 - ECD_01798 0.50 +1.3
1,855,443 - ECD_01798 0.52 +0.8
1,855,447 - ECD_01798 0.52 -0.0
1,855,447 - ECD_01798 0.52 +1.2
1,855,447 - ECD_01798 0.52 +1.6
1,855,474 - ECD_01798 0.56 +0.5
1,855,504 - ECD_01798 0.59 +1.8
1,855,670 - ECD_01798 0.80 +0.8
1,856,338 + ECD_01799 0.25 -0.8
1,856,654 + ECD_01799 0.48 +2.9
1,856,976 + ECD_01799 0.71 -1.4
1,857,155 + ECD_01799 0.84 -0.0
1,857,343 + -1.3
1,857,422 - -0.3
1,857,431 - +0.5
1,857,510 - ECD_01800 0.10 -1.2
1,857,719 - ECD_01800 0.34 -2.1
1,858,007 - ECD_01800 0.67 +0.1
1,858,062 - ECD_01800 0.73 -1.1
1,858,126 - ECD_01800 0.80 +0.6
1,858,222 - -2.3

Or see this region's nucleotide sequence