Strain Fitness in Escherichia coli BL21 around ECD_01784

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01782 and ECD_01783 are separated by 3 nucleotidesECD_01783 and ECD_01784 are separated by 183 nucleotidesECD_01784 and ECD_01785 are separated by 130 nucleotides ECD_01782: ECD_01782 - aminodeoxychorismate synthase, subunit I, at 1,840,532 to 1,841,893 _01782 ECD_01783: ECD_01783 - putative CoA pyrophosphohydrolase, weak 3-phosphohydroxypyruvate phosphatase, at 1,841,897 to 1,842,475 _01783 ECD_01784: ECD_01784 - L-serine dehydratase 1, at 1,842,659 to 1,844,023 _01784 ECD_01785: ECD_01785 - putative membrane-anchored cyclic-di-GMP phosphodiesterase, regulator of cellulose production, at 1,844,154 to 1,845,752 _01785 Position (kb) 1842 1843 1844 1845Strain fitness (log2 ratio) -2 -1 0 1at 1841.692 kb on + strand, within ECD_01782at 1841.753 kb on - strand, within ECD_01782at 1841.788 kb on - strandat 1841.871 kb on + strandat 1842.216 kb on + strand, within ECD_01783at 1842.479 kb on + strandat 1842.489 kb on + strandat 1842.489 kb on + strandat 1842.490 kb on - strandat 1842.597 kb on + strandat 1842.615 kb on + strandat 1842.615 kb on + strandat 1842.904 kb on + strand, within ECD_01784at 1843.088 kb on + strand, within ECD_01784at 1843.344 kb on + strand, within ECD_01784at 1843.553 kb on + strand, within ECD_01784at 1843.553 kb on + strand, within ECD_01784at 1843.553 kb on + strand, within ECD_01784at 1843.592 kb on + strand, within ECD_01784at 1843.634 kb on + strand, within ECD_01784at 1844.021 kb on + strandat 1844.024 kb on + strandat 1844.291 kb on - strandat 1844.415 kb on - strand, within ECD_01785at 1844.871 kb on + strand, within ECD_01785

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
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1,841,692 + ECD_01782 0.85 +0.0
1,841,753 - ECD_01782 0.90 -1.9
1,841,788 - -1.5
1,841,871 + +0.2
1,842,216 + ECD_01783 0.55 -0.7
1,842,479 + -1.0
1,842,489 + +0.7
1,842,489 + -0.6
1,842,490 - -2.0
1,842,597 + +0.3
1,842,615 + -0.5
1,842,615 + -0.5
1,842,904 + ECD_01784 0.18 +1.4
1,843,088 + ECD_01784 0.31 +1.0
1,843,344 + ECD_01784 0.50 +1.4
1,843,553 + ECD_01784 0.65 +0.9
1,843,553 + ECD_01784 0.65 +1.0
1,843,553 + ECD_01784 0.65 +1.4
1,843,592 + ECD_01784 0.68 +1.2
1,843,634 + ECD_01784 0.71 +1.1
1,844,021 + +0.9
1,844,024 + +0.6
1,844,291 - -1.2
1,844,415 - ECD_01785 0.16 -0.7
1,844,871 + ECD_01785 0.45 -0.3

Or see this region's nucleotide sequence