Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01782 and ECD_01783 are separated by 3 nucleotides ECD_01783 and ECD_01784 are separated by 183 nucleotides ECD_01784 and ECD_01785 are separated by 130 nucleotides
ECD_01782: ECD_01782 - aminodeoxychorismate synthase, subunit I, at 1,840,532 to 1,841,893
_01782
ECD_01783: ECD_01783 - putative CoA pyrophosphohydrolase, weak 3-phosphohydroxypyruvate phosphatase, at 1,841,897 to 1,842,475
_01783
ECD_01784: ECD_01784 - L-serine dehydratase 1, at 1,842,659 to 1,844,023
_01784
ECD_01785: ECD_01785 - putative membrane-anchored cyclic-di-GMP phosphodiesterase, regulator of cellulose production, at 1,844,154 to 1,845,752
_01785
Position (kb)
1842
1843
1844
1845 Strain fitness (log2 ratio)
-2
-1
0
1 at 1841.692 kb on + strand, within ECD_01782 at 1841.753 kb on - strand, within ECD_01782 at 1841.788 kb on - strand at 1841.871 kb on + strand at 1842.216 kb on + strand, within ECD_01783 at 1842.479 kb on + strand at 1842.489 kb on + strand at 1842.489 kb on + strand at 1842.490 kb on - strand at 1842.597 kb on + strand at 1842.615 kb on + strand at 1842.615 kb on + strand at 1842.904 kb on + strand, within ECD_01784 at 1843.088 kb on + strand, within ECD_01784 at 1843.344 kb on + strand, within ECD_01784 at 1843.553 kb on + strand, within ECD_01784 at 1843.553 kb on + strand, within ECD_01784 at 1843.553 kb on + strand, within ECD_01784 at 1843.592 kb on + strand, within ECD_01784 at 1843.634 kb on + strand, within ECD_01784 at 1844.021 kb on + strand at 1844.024 kb on + strand at 1844.291 kb on - strand at 1844.415 kb on - strand, within ECD_01785 at 1844.871 kb on + strand, within ECD_01785
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 1,841,692 + ECD_01782 0.85 +0.0 1,841,753 - ECD_01782 0.90 -1.9 1,841,788 - -1.5 1,841,871 + +0.2 1,842,216 + ECD_01783 0.55 -0.7 1,842,479 + -1.0 1,842,489 + +0.7 1,842,489 + -0.6 1,842,490 - -2.0 1,842,597 + +0.3 1,842,615 + -0.5 1,842,615 + -0.5 1,842,904 + ECD_01784 0.18 +1.4 1,843,088 + ECD_01784 0.31 +1.0 1,843,344 + ECD_01784 0.50 +1.4 1,843,553 + ECD_01784 0.65 +0.9 1,843,553 + ECD_01784 0.65 +1.0 1,843,553 + ECD_01784 0.65 +1.4 1,843,592 + ECD_01784 0.68 +1.2 1,843,634 + ECD_01784 0.71 +1.1 1,844,021 + +0.9 1,844,024 + +0.6 1,844,291 - -1.2 1,844,415 - ECD_01785 0.16 -0.7 1,844,871 + ECD_01785 0.45 -0.3
Or see this region's nucleotide sequence