Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01694 and ECD_01695 are separated by 40 nucleotides ECD_01695 and ECD_01696 are separated by 146 nucleotides ECD_01696 and ECD_01697 are separated by 162 nucleotides ECD_01697 and ECD_01698 are separated by 132 nucleotides
ECD_01694: ECD_01694 - fructosamine kinase family protein, at 1,752,209 to 1,753,069
_01694
ECD_01695: ECD_01695 - putative inner membrane protein, at 1,753,110 to 1,753,646
_01695
ECD_01696: ECD_01696 - 2-deoxyglucose-6-P phosphatase, at 1,753,793 to 1,754,461
_01696
ECD_01697: ECD_01697 - inner membrane protein regulated by LexA, at 1,754,624 to 1,755,214
_01697
ECD_01698: ECD_01698 - putative transporter, at 1,755,347 to 1,756,738
_01698
Position (kb)
1753
1754
1755 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1752.943 kb on - strand, within ECD_01694 at 1753.175 kb on - strand, within ECD_01695 at 1753.691 kb on + strand at 1753.691 kb on + strand at 1753.739 kb on - strand at 1753.744 kb on + strand at 1753.759 kb on - strand at 1754.152 kb on + strand, within ECD_01696 at 1754.250 kb on + strand, within ECD_01696 at 1755.164 kb on - strand at 1755.260 kb on + strand at 1755.260 kb on + strand at 1755.325 kb on + strand at 1755.326 kb on - strand at 1755.328 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 1,752,943 - ECD_01694 0.85 -1.8 1,753,175 - ECD_01695 0.12 +0.4 1,753,691 + +0.5 1,753,691 + -1.8 1,753,739 - +0.1 1,753,744 + +1.1 1,753,759 - -1.0 1,754,152 + ECD_01696 0.54 -1.0 1,754,250 + ECD_01696 0.68 -0.8 1,755,164 - +2.1 1,755,260 + -0.3 1,755,260 + -1.8 1,755,325 + -1.1 1,755,326 - -1.6 1,755,328 + +0.7
Or see this region's nucleotide sequence