Strain Fitness in Escherichia coli BL21 around ECD_01624

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01623 and ECD_01624 are separated by 50 nucleotidesECD_01624 and ECD_01625 are separated by 333 nucleotides ECD_01623: ECD_01623 - putative ATP-dependent helicase, at 1,674,283 to 1,678,899 _01623 ECD_01624: ECD_01624 - glutaredoxin-4, at 1,678,950 to 1,679,297 _01624 ECD_01625: ECD_01625 - murein DD-endopeptidase, space-maker hydrolase, at 1,679,631 to 1,680,446 _01625 Position (kb) 1678 1679 1680Strain fitness (log2 ratio) -1 0 1 2 3at 1678.817 kb on + strandat 1678.979 kb on - strandat 1679.027 kb on - strand, within ECD_01624at 1679.100 kb on - strand, within ECD_01624at 1679.153 kb on - strand, within ECD_01624at 1680.153 kb on + strand, within ECD_01625at 1680.208 kb on - strand, within ECD_01625at 1680.239 kb on + strand, within ECD_01625

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
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1,678,817 + -1.1
1,678,979 - -0.6
1,679,027 - ECD_01624 0.22 +0.5
1,679,100 - ECD_01624 0.43 +2.3
1,679,153 - ECD_01624 0.58 +1.8
1,680,153 + ECD_01625 0.64 +0.7
1,680,208 - ECD_01625 0.71 +3.1
1,680,239 + ECD_01625 0.75 +0.6

Or see this region's nucleotide sequence