Strain Fitness in Escherichia coli BL21 around ECD_01579

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01578 and ECD_01579 are separated by 75 nucleotidesECD_01579 and ECD_01580 overlap by 4 nucleotides ECD_01578: ECD_01578 - sensory histidine kinase of RstAB two-component system, at 1,628,079 to 1,629,380 _01578 ECD_01579: ECD_01579 - inhibitor of replication at Ter, DNA-binding protein, at 1,629,456 to 1,630,385 _01579 ECD_01580: ECD_01580 - fumarate hydratase (fumarase C),aerobic Class II, at 1,630,382 to 1,631,785 _01580 Position (kb) 1629 1630 1631Strain fitness (log2 ratio) -1 0 1at 1628.510 kb on + strand, within ECD_01578at 1628.572 kb on + strand, within ECD_01578at 1628.624 kb on + strand, within ECD_01578at 1629.266 kb on + strandat 1629.455 kb on + strandat 1629.455 kb on + strandat 1629.553 kb on + strand, within ECD_01579at 1629.553 kb on + strand, within ECD_01579at 1629.983 kb on + strand, within ECD_01579at 1629.983 kb on + strand, within ECD_01579at 1630.101 kb on + strand, within ECD_01579at 1630.322 kb on + strandat 1631.061 kb on + strand, within ECD_01580

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
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1,628,510 + ECD_01578 0.33 +0.2
1,628,572 + ECD_01578 0.38 +1.2
1,628,624 + ECD_01578 0.42 +0.9
1,629,266 + +0.8
1,629,455 + -1.2
1,629,455 + -0.5
1,629,553 + ECD_01579 0.10 +1.6
1,629,553 + ECD_01579 0.10 +1.1
1,629,983 + ECD_01579 0.57 +0.9
1,629,983 + ECD_01579 0.57 +1.2
1,630,101 + ECD_01579 0.69 +0.9
1,630,322 + +0.4
1,631,061 + ECD_01580 0.48 -0.6

Or see this region's nucleotide sequence