Strain Fitness in Escherichia coli BL21 around ECD_01301

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01300 and ECD_01301 are separated by 43 nucleotidesECD_01301 and ECD_01302 are separated by 118 nucleotides ECD_01300: ECD_01300 - aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase, at 1,373,087 to 1,374,628 _01300 ECD_01301: ECD_01301 - lipid hydroperoxide peroxidase, at 1,374,672 to 1,375,178 _01301 ECD_01302: ECD_01302 - L-Ala-D/L-Glu epimerase, at 1,375,297 to 1,376,262 _01302 Position (kb) 1374 1375 1376Strain fitness (log2 ratio) -1 0 1 2at 1374.155 kb on + strand, within ECD_01300at 1374.303 kb on + strand, within ECD_01300at 1374.307 kb on + strand, within ECD_01300at 1374.352 kb on + strand, within ECD_01300at 1374.669 kb on - strandat 1374.827 kb on - strand, within ECD_01301at 1374.933 kb on - strand, within ECD_01301at 1375.334 kb on + strandat 1375.334 kb on + strandat 1375.334 kb on + strandat 1375.334 kb on + strandat 1375.413 kb on + strand, within ECD_01302at 1375.414 kb on - strand, within ECD_01302at 1375.983 kb on + strand, within ECD_01302at 1376.034 kb on + strand, within ECD_01302at 1376.130 kb on + strand, within ECD_01302at 1376.131 kb on - strand, within ECD_01302

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
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1,374,155 + ECD_01300 0.69 +0.4
1,374,303 + ECD_01300 0.79 -0.2
1,374,307 + ECD_01300 0.79 -0.4
1,374,352 + ECD_01300 0.82 +0.6
1,374,669 - +0.5
1,374,827 - ECD_01301 0.31 -1.3
1,374,933 - ECD_01301 0.51 -0.2
1,375,334 + -0.0
1,375,334 + +0.6
1,375,334 + +0.9
1,375,334 + +0.7
1,375,413 + ECD_01302 0.12 +1.4
1,375,414 - ECD_01302 0.12 -0.1
1,375,983 + ECD_01302 0.71 +1.8
1,376,034 + ECD_01302 0.76 +0.7
1,376,130 + ECD_01302 0.86 -0.1
1,376,131 - ECD_01302 0.86 +1.5

Or see this region's nucleotide sequence