Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01280 and ECD_01281 are separated by 166 nucleotides ECD_01281 and ECD_01282 are separated by 53 nucleotides ECD_01282 and ECD_01283 overlap by 1 nucleotides ECD_01283 and ECD_01284 are separated by 8 nucleotides ECD_01284 and ECD_01285 are separated by 74 nucleotides
ECD_01280: ECD_01280 - psp operon transcriptional activator, at 1,353,301 to 1,354,278
_01280
ECD_01281: ECD_01281 - regulatory protein for phage-shock-protein operon, at 1,354,445 to 1,355,113
_01281
ECD_01282: ECD_01282 - psp operon transcription co-activator, at 1,355,167 to 1,355,391
_01282
ECD_01283: ECD_01283 - psp operon transcription co-activator, at 1,355,391 to 1,355,750
_01283
ECD_01284: ECD_01284 - peripheral inner membrane phage-shock protein, at 1,355,759 to 1,355,980
_01284
ECD_01285: ECD_01285 - thiosulfate:cyanide sulfurtransferase (rhodanese), at 1,356,055 to 1,356,369
_01285
Position (kb) 1354
1355
1356 Strain fitness (log2 ratio) -1
0
1
2
3 at 1353.845 kb on - strand, within ECD_01280 at 1354.450 kb on + strand at 1354.558 kb on + strand, within ECD_01281 at 1354.558 kb on + strand, within ECD_01281 at 1354.558 kb on + strand, within ECD_01281 at 1354.572 kb on + strand, within ECD_01281 at 1354.579 kb on + strand, within ECD_01281 at 1354.716 kb on + strand, within ECD_01281 at 1354.866 kb on + strand, within ECD_01281 at 1354.866 kb on + strand, within ECD_01281 at 1354.866 kb on + strand, within ECD_01281 at 1355.559 kb on + strand, within ECD_01283 at 1355.794 kb on - strand, within ECD_01284 at 1355.826 kb on + strand, within ECD_01284 at 1356.018 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 1,353,845 - ECD_01280 0.56 -0.6 1,354,450 + +2.6 1,354,558 + ECD_01281 0.17 +3.1 1,354,558 + ECD_01281 0.17 +3.1 1,354,558 + ECD_01281 0.17 +2.0 1,354,572 + ECD_01281 0.19 +3.0 1,354,579 + ECD_01281 0.20 +3.4 1,354,716 + ECD_01281 0.41 +3.0 1,354,866 + ECD_01281 0.63 +0.5 1,354,866 + ECD_01281 0.63 +1.3 1,354,866 + ECD_01281 0.63 +1.7 1,355,559 + ECD_01283 0.47 -0.4 1,355,794 - ECD_01284 0.16 +0.4 1,355,826 + ECD_01284 0.30 -0.6 1,356,018 - -0.1
Or see this region's nucleotide sequence