Strain Fitness in Escherichia coli BL21 around ECD_01240

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01238 and ECD_01239 are separated by 91 nucleotidesECD_01239 and ECD_01240 are separated by 137 nucleotidesECD_01240 and ECD_01241 overlap by 4 nucleotides ECD_01238: ECD_01238 - component I of anthranilate synthase, at 1,306,976 to 1,308,538 _01238 ECD_01239: ECD_01239 - trp operon leader peptide, at 1,308,630 to 1,308,674 _01239 ECD_01240: ECD_01240 - PHP domain protein, at 1,308,812 to 1,309,693 _01240 ECD_01241: ECD_01241 - putative RNA binding protein, at 1,309,690 to 1,310,310 _01241 Position (kb) 1308 1309 1310Strain fitness (log2 ratio) -1 0 1 2at 1307.895 kb on - strand, within ECD_01238at 1308.355 kb on + strand, within ECD_01238at 1308.617 kb on + strandat 1308.752 kb on + strandat 1308.840 kb on - strandat 1309.084 kb on + strand, within ECD_01240at 1309.179 kb on + strand, within ECD_01240at 1309.179 kb on + strand, within ECD_01240at 1309.351 kb on - strand, within ECD_01240at 1309.980 kb on + strand, within ECD_01241at 1309.980 kb on + strand, within ECD_01241at 1310.250 kb on + strandat 1310.259 kb on + strandat 1310.532 kb on + strandat 1310.607 kb on + strandat 1310.607 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
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1,307,895 - ECD_01238 0.59 +0.1
1,308,355 + ECD_01238 0.88 -0.2
1,308,617 + -0.1
1,308,752 + -1.7
1,308,840 - -1.6
1,309,084 + ECD_01240 0.31 -0.6
1,309,179 + ECD_01240 0.42 +0.3
1,309,179 + ECD_01240 0.42 +0.7
1,309,351 - ECD_01240 0.61 +2.2
1,309,980 + ECD_01241 0.47 -0.9
1,309,980 + ECD_01241 0.47 -0.4
1,310,250 + +0.8
1,310,259 + -0.0
1,310,532 + -1.1
1,310,607 + -0.9
1,310,607 + +1.7

Or see this region's nucleotide sequence