Strain Fitness in Escherichia coli BL21 around ECD_01177

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01176 and ECD_01177 are separated by 99 nucleotidesECD_01177 and ECD_01178 are separated by 768 nucleotides ECD_01176: ECD_01176 - dhaKLM operon transcription activator, at 1,239,214 to 1,241,133 _01176 ECD_01177: ECD_01177 - putative adhesin, at 1,241,233 to 1,244,100 _01177 ECD_01178: ECD_01178 - catalase inhibitor protein; ATPase, K+-dependent, ribosome-associated, at 1,244,869 to 1,245,960 _01178 Position (kb) 1241 1242 1243 1244 1245Strain fitness (log2 ratio) -2 -1 0 1at 1240.348 kb on + strand, within ECD_01176at 1240.370 kb on + strand, within ECD_01176at 1240.372 kb on + strand, within ECD_01176at 1241.001 kb on + strandat 1241.542 kb on + strand, within ECD_01177at 1241.543 kb on - strand, within ECD_01177at 1241.569 kb on - strand, within ECD_01177at 1241.596 kb on - strand, within ECD_01177at 1241.619 kb on - strand, within ECD_01177at 1241.895 kb on - strand, within ECD_01177at 1241.906 kb on - strand, within ECD_01177at 1241.906 kb on - strand, within ECD_01177at 1242.419 kb on - strand, within ECD_01177at 1242.468 kb on + strand, within ECD_01177at 1242.511 kb on - strand, within ECD_01177at 1242.777 kb on + strand, within ECD_01177at 1242.783 kb on + strand, within ECD_01177at 1242.815 kb on + strand, within ECD_01177at 1242.859 kb on - strand, within ECD_01177at 1242.864 kb on + strand, within ECD_01177at 1243.080 kb on - strand, within ECD_01177at 1243.370 kb on - strand, within ECD_01177at 1243.473 kb on - strand, within ECD_01177at 1243.536 kb on - strand, within ECD_01177at 1243.556 kb on - strand, within ECD_01177at 1243.658 kb on - strand, within ECD_01177at 1244.110 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
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1,240,348 + ECD_01176 0.59 -2.0
1,240,370 + ECD_01176 0.60 -0.9
1,240,372 + ECD_01176 0.60 -1.5
1,241,001 + +0.2
1,241,542 + ECD_01177 0.11 -1.6
1,241,543 - ECD_01177 0.11 -0.7
1,241,569 - ECD_01177 0.12 -0.3
1,241,596 - ECD_01177 0.13 +0.6
1,241,619 - ECD_01177 0.13 -1.4
1,241,895 - ECD_01177 0.23 -1.0
1,241,906 - ECD_01177 0.23 -2.4
1,241,906 - ECD_01177 0.23 -0.7
1,242,419 - ECD_01177 0.41 -1.4
1,242,468 + ECD_01177 0.43 -0.6
1,242,511 - ECD_01177 0.45 -0.7
1,242,777 + ECD_01177 0.54 -1.1
1,242,783 + ECD_01177 0.54 +0.9
1,242,815 + ECD_01177 0.55 +0.6
1,242,859 - ECD_01177 0.57 +1.6
1,242,864 + ECD_01177 0.57 -1.1
1,243,080 - ECD_01177 0.64 +0.4
1,243,370 - ECD_01177 0.75 -0.0
1,243,473 - ECD_01177 0.78 -0.7
1,243,536 - ECD_01177 0.80 -1.4
1,243,556 - ECD_01177 0.81 +0.3
1,243,658 - ECD_01177 0.85 -1.7
1,244,110 - -0.0

Or see this region's nucleotide sequence